Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 6.0e-163 577.4 284 100.0
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.0e-141 506.9 288 88.5
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.2e-141 505.8 289 88.2
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 3.6e-131 471.9 287 84.7
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 8.2e-120 434.1 289 77.9
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 1.4e-119 433.3 215 99.1
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.0e-117 427.2 290 73.4
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 2.9e-117 425.6 285 75.1
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 1.9e-116 422.9 290 73.8
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 4.2e-116 421.8 286 74.5
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 1.2e-115 420.2 282 74.5
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.2e-115 420.2 285 75.1
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 4.7e-115 418.3 284 73.2
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 4.7e-115 418.3 238 83.2
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.4e-114 416.8 282 74.5
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.4e-114 416.8 282 74.5
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.4e-114 416.8 282 74.5
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 2.3e-114 416.0 241 83.0
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 3.0e-114 415.6 293 72.0
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 8.8e-114 414.1 282 73.8
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.5e-113 413.3 254 78.7
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.5e-113 413.3 283 73.5
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.0e-113 412.9 267 76.4
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 2.6e-113 412.5 274 72.6
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 2.6e-113 412.5 246 80.5
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 4.4e-113 411.8 280 74.3
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 7.5e-113 411.0 273 74.0
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 9.8e-113 410.6 251 79.3
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.3e-112 410.2 288 72.2
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 1.3e-112 410.2 284 73.2
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.7e-112 409.8 282 73.8
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 3.7e-112 408.7 269 76.2
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 4.8e-112 408.3 284 73.9
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 8.3e-112 407.5 274 72.3
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.4e-111 406.8 282 72.7
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.8e-111 406.4 280 73.6
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 3.1e-111 405.6 280 73.6
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 9.1e-111 404.1 248 78.2
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.0e-110 402.9 244 79.5
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.7e-110 402.5 273 72.9
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 3.5e-110 402.1 250 78.0
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 3.5e-110 402.1 250 78.0
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 3.5e-110 402.1 248 77.0
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 7.7e-110 401.0 240 79.2
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.0e-109 400.6 245 78.4
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.0e-109 400.6 240 80.4
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.0e-109 400.6 283 72.4
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 3.8e-109 398.7 243 79.4
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 3.8e-109 398.7 243 79.4
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 5.0e-109 398.3 283 71.0
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 5.0e-109 398.3 270 73.0
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 6.5e-109 397.9 280 72.9
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 6.5e-109 397.9 248 76.6
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 6.5e-109 397.9 245 78.4
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 8.5e-109 397.5 265 74.0
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 8.5e-109 397.5 239 78.2
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 1.1e-108 397.1 281 71.9
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.1e-108 397.1 247 77.7
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 1.5e-108 396.7 241 79.3
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.5e-108 396.7 247 78.1
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.9e-108 396.4 244 76.6
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.5e-108 396.0 249 76.7
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.2e-108 395.6 282 72.3
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 4.2e-108 395.2 240 76.7
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 7.2e-108 394.4 248 76.2
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 9.4e-108 394.0 248 75.8
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 9.4e-108 394.0 249 77.9
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 9.4e-108 394.0 249 77.1
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.2e-107 393.7 236 78.4
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 1.2e-107 393.7 280 71.4
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 1.6e-107 393.3 244 77.0
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 3.6e-107 392.1 240 79.2
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.7e-107 391.7 239 77.4
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 1.0e-106 390.6 245 75.9
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.4e-106 390.2 280 71.8
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.8e-106 389.8 246 75.6
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 4.0e-106 388.7 257 73.2
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 4.0e-106 388.7 245 76.3
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 5.2e-106 388.3 241 76.8
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 5.2e-106 388.3 240 75.8
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.5e-105 386.7 245 74.7
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 1.5e-105 386.7 255 73.3
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.0e-105 386.3 245 75.9
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.6e-105 386.0 245 73.9
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.3e-104 383.6 276 68.5
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.7e-104 383.3 245 75.1
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.7e-104 383.3 282 68.1
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 2.2e-104 382.9 282 68.1
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 2.2e-104 382.9 282 68.1
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.1e-103 380.6 245 74.7
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.4e-103 380.2 240 76.7
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 3.1e-103 379.0 241 76.3
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 5.4e-103 378.3 224 80.4
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 9.1e-103 377.5 243 73.7
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 1.2e-102 377.1 245 74.3
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.6e-102 376.7 277 67.1
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 3.5e-102 375.6 241 75.9
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.3e-101 373.6 242 74.8
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.9e-101 372.5 273 69.6
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 2.5e-100 369.4 225 78.7
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.6e-99 366.7 245 73.1
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 3.6e-99 365.5 276 69.6
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 3.6e-99 365.5 243 70.0
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 8.0e-99 364.4 243 70.4
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.0e-98 364.0 240 73.3
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 6.8e-98 361.3 280 66.4
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.4e-97 359.0 372 53.2
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 7.5e-97 357.8 249 71.1
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 7.0e-95 351.3 268 66.0
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.9e-93 345.5 225 73.8
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 6.8e-90 334.7 222 72.1
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 2.4e-87 326.2 265 61.5
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.5e-86 322.4 245 66.1
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 7.8e-86 321.2 243 63.0
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 3.0e-85 319.3 289 56.4
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 9.5e-84 314.3 238 64.3
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 5.8e-81 305.1 277 55.6
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 9.8e-81 304.3 191 76.4
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 7.8e-78 294.7 250 60.4
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 2.9e-72 276.2 254 55.9
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.4e-71 273.9 175 74.3
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 5.4e-71 271.9 180 70.6
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 9.6e-68 261.2 226 59.3
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 6.8e-66 255.0 245 53.5
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 7.1e-63 245.0 221 56.6
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 5.6e-60 235.3 135 83.0
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 2.8e-59 233.0 257 49.4
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 2.8e-59 233.0 135 84.4
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 2.6e-57 226.5 171 63.2
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.1e-51 206.8 235 48.5
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.9e-47 193.7 229 41.5
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.2e-46 191.0 220 45.0
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.0e-45 188.0 115 76.5
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.9e-44 183.7 127 70.9
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.1e-42 177.9 126 70.6
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 1.5e-41 174.1 219 42.0
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.5e-39 166.8 114 70.2
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 9.6e-36 154.8 87 80.5
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.0e-33 147.1 84 82.1
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-32 144.4 147 52.4
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 6.5e-32 142.1 115 61.7
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.6e-25 120.2 111 63.1
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 6.5e-24 115.5 81 70.4
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 4.6e-22 109.4 72 72.2
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.8e-21 107.5 250 30.4
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.4e-17 93.2 58 74.1
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.9e-16 90.1 166 39.8
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.9e-15 87.4 86 53.5
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.4e-10 71.2 71 50.7
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 4.1e-10 69.7 69 52.2
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.6e-09 67.8 174 29.3
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 3.5e-09 66.6 246 26.8
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 7.7e-09 65.5 243 26.3
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 7.7e-09 65.5 243 26.3
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 2.2e-08 63.9 233 28.3
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 2.2e-08 63.9 246 26.4
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 3.8e-08 63.2 235 26.0
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 3.8e-08 63.2 244 26.2
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 2.5e-07 60.5 231 26.8
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 4.2e-07 59.7 28 92.9
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.2e-06 58.2 37 73.0
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.2e-06 58.2 243 25.1
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.7e-06 57.0 225 24.9


User provided reference genes

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