Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.8e-226 788.9 388 100.0
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 8.7e-221 770.0 388 97.4
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.4e-201 704.9 408 85.8
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.3e-181 639.0 358 86.0
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.8e-179 631.3 354 86.2
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 9.1e-178 627.1 396 78.0
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 9.7e-164 580.5 348 79.0
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.8e-162 576.2 351 77.8
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 3.1e-162 575.5 351 77.5
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 8.5e-160 567.4 350 75.4
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.5e-159 566.6 352 76.1
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 7.2e-159 564.3 352 75.3
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.3e-157 559.3 349 75.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 3.3e-156 555.4 349 76.5
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.2e-155 552.7 349 74.2
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.1e-154 548.9 363 71.1
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 3.1e-154 548.9 356 72.8
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 5.3e-154 548.1 351 73.5
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 5.3e-154 548.1 352 73.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.6e-153 546.6 383 68.4
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.7e-153 545.8 351 72.6
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 7.7e-153 544.3 351 72.9
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.0e-152 543.9 348 73.9
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.3e-152 543.5 352 73.6
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 2.2e-152 542.7 352 73.3
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 5.0e-152 541.6 350 72.9
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 5.0e-152 541.6 350 72.3
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.1e-151 540.4 365 71.0
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.5e-151 540.0 353 73.7
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 3.2e-151 538.9 370 70.3
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 3.2e-151 538.9 349 73.4
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.5e-151 538.1 350 72.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 5.5e-151 538.1 350 72.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.2e-150 537.0 353 72.8
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.6e-150 536.6 353 72.8
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.6e-150 536.6 351 74.6
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.6e-150 536.6 377 69.0
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.7e-150 535.8 362 69.9
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.1e-150 534.6 363 71.3
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.4e-149 533.5 366 71.0
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.4e-149 533.5 353 72.0
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 2.3e-149 532.7 350 72.0
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 3.0e-149 532.3 350 72.0
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 2.6e-148 529.3 350 72.0
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 2.6e-148 529.3 353 70.8
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 5.7e-148 528.1 366 69.7
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 7.5e-148 527.7 353 71.1
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 5.4e-146 521.5 341 73.3
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 7.0e-146 521.2 327 74.9
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 9.1e-146 520.8 305 80.0
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.6e-145 520.0 364 70.1
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.6e-145 520.0 368 68.5
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 2.7e-145 519.2 352 70.7
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 2.3e-144 516.2 355 70.4
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 6.6e-144 514.6 361 68.1
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 8.6e-144 514.2 364 69.2
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.1e-143 513.8 323 75.5
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.5e-143 512.7 347 71.2
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 3.3e-143 512.3 355 69.3
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 5.5e-143 511.5 352 69.6
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.2e-143 511.1 411 61.6
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 1.2e-142 510.4 356 70.5
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 3.0e-141 505.8 358 67.9
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 5.2e-141 505.0 349 69.3
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.5e-140 503.4 375 66.1
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 3.4e-140 502.3 353 70.0
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 4.4e-140 501.9 375 64.3
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 4.4e-140 501.9 370 65.7
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.7e-139 500.0 354 68.6
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.2e-139 499.6 353 69.1
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.9e-139 498.4 350 68.9
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 6.3e-139 498.0 349 68.8
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.1e-138 497.3 350 68.3
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.4e-138 496.9 350 69.4
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 5.4e-138 495.0 345 67.5
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.6e-137 493.4 303 75.2
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.7e-137 492.7 362 65.7
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.7e-136 490.0 391 61.4
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 5.6e-135 485.0 349 65.0
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.6e-134 483.4 307 74.3
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.6e-134 483.4 334 69.5
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.6e-134 483.4 348 67.0
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 2.1e-134 483.0 372 64.2
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-133 480.7 373 60.6
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.0e-133 480.7 368 64.4
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 6.8e-133 478.0 350 63.4
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 8.9e-133 477.6 351 63.8
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 8.9e-133 477.6 352 63.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.2e-132 477.2 350 63.4
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.5e-132 476.9 357 65.3
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.7e-131 473.4 350 63.7
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.7e-131 473.4 309 74.1
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.2e-131 473.0 358 63.7
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 3.7e-131 472.2 276 80.4
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 4.9e-131 471.9 328 68.6
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 4.9e-131 471.9 328 68.9
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 6.4e-131 471.5 346 63.3
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 8.3e-131 471.1 349 62.8
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 2.4e-130 469.5 316 72.2
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 7.0e-130 468.0 351 62.1
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 2.7e-129 466.1 352 61.4
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 3.5e-129 465.7 352 61.9
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.5e-129 465.7 303 71.6
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.3e-128 463.0 358 62.6
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 3.0e-128 462.6 351 61.5
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 7.3e-127 458.0 361 62.3
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.1e-125 454.1 322 68.0
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 6.8e-125 451.4 304 69.4
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.8e-124 448.4 335 66.0
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-122 444.1 330 62.1
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.1e-121 439.9 350 60.3
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 4.6e-121 438.7 263 77.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.7e-120 436.8 329 65.3
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.0e-120 436.0 337 64.1
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-111 407.5 367 56.9
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 9.5e-111 404.4 248 77.4
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 6.8e-109 398.3 251 74.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 2.7e-105 386.3 477 43.8
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.3e-104 383.3 221 80.1
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 2.3e-104 383.3 250 69.6
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.1e-103 380.9 254 71.7
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.5e-103 380.6 324 59.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 5.6e-103 378.6 381 55.4
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 4.8e-102 375.6 242 73.1
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.1e-101 372.9 380 52.1
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.3e-99 367.5 379 48.5
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.1e-98 364.4 251 68.1
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 1.6e-94 350.5 206 79.1
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.1e-94 350.1 224 74.6
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 3.6e-94 349.4 375 48.5
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.6e-92 343.2 349 51.0
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 3.4e-92 342.8 358 48.9
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.3e-91 340.9 405 46.9
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 8.4e-91 338.2 294 59.9
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 7.1e-90 335.1 295 55.9
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 7.1e-90 335.1 298 54.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 7.9e-89 331.6 251 63.3
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 5.1e-88 328.9 281 60.9
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.1e-79 301.2 196 72.4
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.2e-78 295.0 191 74.9
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.4e-77 294.3 302 52.6
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.4e-77 293.5 218 65.6
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.0e-75 288.1 333 50.8
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 2.7e-73 280.0 192 66.1
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 6.1e-73 278.9 275 47.6
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-70 271.2 191 70.2
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.7e-65 253.4 194 62.9
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.2e-59 233.8 134 81.3
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 7.7e-52 208.8 176 58.5
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 8.5e-51 205.3 337 40.9
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.8e-45 187.6 126 68.3
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 7.0e-45 185.7 208 52.4
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.7e-43 181.0 347 32.0
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.1e-42 178.3 116 70.7
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 4.2e-42 176.4 326 38.7
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 1.3e-38 164.9 219 37.9
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.6e-36 157.9 302 30.1
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 4.7e-33 146.4 89 74.2
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 3.0e-32 143.7 156 44.9
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 4.7e-25 119.8 207 33.8
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.5e-18 98.2 75 61.3
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.2e-16 89.7 68 60.3
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 8.9e-16 89.0 69 55.1
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 2.0e-15 87.8 69 55.1
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.1e-13 82.0 77 51.9
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 5.4e-13 79.7 49 73.5
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.7e-12 77.4 74 47.3
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.6e-12 76.6 40 90.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.6e-07 60.8 53 52.8
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.3e-06 58.5 53 50.9
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 2.9e-06 57.4 54 55.6


User provided reference genes

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