Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g025410 Solanum pennellii HOM05D007186 ORTHO05D008970 2.4e-44 181.8 93 100.0
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 4.6e-27 124.4 67 95.5
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 1.3e-26 122.9 67 94.0
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 1.5e-22 109.4 68 86.8
MSTRG.6661 Avicennia marina HOM05D007186 ORTHO05D008970 6.2e-16 87.4 66 71.2
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 8.1e-16 87.0 60 83.3
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 1.8e-15 85.9 66 72.7
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 2.4e-15 85.5 46 84.8
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 8.9e-15 83.6 46 89.1
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 1.2e-14 83.2 71 64.8
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 1.2e-14 83.2 66 68.2
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.0e-14 82.4 44 90.9
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.0e-14 82.4 44 90.9
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 2.0e-14 82.4 49 81.6
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 2.0e-14 82.4 44 88.6
vmacro12130 Vaccinium macrocarpon HOM05D007186 ORTHO05D008970 2.0e-14 82.4 57 70.2
Gohir.A07G189700 Gossypium hirsutum HOM05D007186 ORTHO05D008970 2.6e-14 82.0 49 85.7
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 2.6e-14 82.0 49 85.7
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 2.6e-14 82.0 49 85.7
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 2.6e-14 82.0 60 71.7
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 3.4e-14 81.6 75 58.7
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 4.4e-14 81.3 44 88.6
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 5.8e-14 80.9 60 68.3
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 5.8e-14 80.9 54 74.1
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 5.8e-14 80.9 55 74.5
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 7.6e-14 80.5 44 86.4
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 7.6e-14 80.5 44 86.4
FAN14G0401 Fragaria x ananassa HOM05D007186 ORTHO05D008970 7.6e-14 80.5 44 86.4
Thecc.01G185600 Theobroma cacao HOM05D007186 ORTHO05D008970 7.6e-14 80.5 60 73.3
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 9.9e-14 80.1 60 71.7
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 9.9e-14 80.1 44 86.4
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 9.9e-14 80.1 49 81.6
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 1.3e-13 79.7 44 86.4
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 1.7e-13 79.3 60 71.7
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 2.2e-13 79.0 56 71.4
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 2.2e-13 79.0 48 81.2
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 2.2e-13 79.0 43 88.4
FAN02G3692 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.9e-13 78.6 44 86.4
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 2.9e-13 78.6 44 81.8
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 3.8e-13 78.2 44 84.1
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 4.9e-13 77.8 79 50.6
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 6.4e-13 77.4 88 47.7
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 6.4e-13 77.4 44 84.1
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 8.4e-13 77.0 43 86.0
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 1.1e-12 76.6 59 71.2
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.4e-12 76.3 43 81.4
AUR62025215 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.4e-12 76.3 43 81.4
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.4e-12 76.3 43 81.4
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.4e-12 76.3 43 81.4
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 1.9e-12 75.9 60 65.0
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.9e-12 75.9 43 81.4
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 1.9e-12 75.9 43 86.0
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 1.9e-12 75.9 46 78.3
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 1.9e-12 75.9 46 78.3
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 2.4e-12 75.5 60 65.0
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 4.2e-12 74.7 44 79.5
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 7.1e-12 73.9 44 79.5
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 7.1e-12 73.9 46 69.6
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 7.1e-12 73.9 60 58.3
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 9.3e-12 73.6 44 81.8
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 1.6e-11 72.8 43 81.4
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 1.6e-11 72.8 45 75.6
Sed0024069 Sechium edule HOM05D007186 ORTHO05D008970 2.1e-11 72.4 60 63.3
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 2.7e-11 72.0 65 55.4
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 2.7e-11 72.0 65 55.4
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 2.7e-11 72.0 51 68.6
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 3.5e-11 71.6 44 77.3
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 3.5e-11 71.6 65 55.4
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 3.5e-11 71.6 65 55.4
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 3.5e-11 71.6 38 92.1
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 6.0e-11 70.9 65 55.4
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 7.8e-11 70.5 65 52.3
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 7.8e-11 70.5 51 66.7
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 2.3e-10 68.9 65 50.8
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 2.3e-10 68.9 65 50.8
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 3.0e-10 68.6 44 72.7
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 3.9e-10 68.2 46 71.7
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 3.9e-10 68.2 43 74.4
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 5.1e-10 67.8 43 74.4
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 1.1e-09 66.6 43 74.4
Os02g0588600 Oryza sativa ssp. japonica HOM05D007186 ORTHO05D008970 3.3e-09 65.1 57 61.4
SalBow7G1582 Salvia bowleyana HOM05D000037 ORTHO05D000150 7.3e-09 63.9 42 81.0
AT2G04790 Arabidopsis thaliana HOM05D007186 ORTHO05D008970 9.6e-09 63.5 46 67.4
Lalb_Chr04g0247191 Lupinus albus HOM05D007186 ORTHO05D008970 9.6e-09 63.5 41 73.2
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 1.3e-08 63.2 43 69.8
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 3.6e-08 61.6 61 54.1
Migut.M00010 Erythranthe guttata HOM05D007186 ORTHO05D008970 3.6e-08 61.6 44 77.3
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 6.2e-08 60.8 41 63.4
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 6.2e-08 60.8 43 69.8
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 1.4e-07 59.7 50 62.0
Lsat_1_v5_gn_9_105540 Lactuca sativa HOM05D007186 ORTHO05D008970 2.4e-07 58.9 54 64.8
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 4.0e-07 58.2 41 70.7
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 9.0e-07 57.0 43 62.8
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 1.5e-06 56.2 36 66.7
SEGI_21441 Sequoiadendron giganteum HOM05D007186 ORTHO05D008970 7.6e-06 53.9 40 57.5


User provided reference genes

Program Settings