Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g023090 Solanum pennellii HOM05D006947 ORTHO05D008818 0.0e+00 1581.2 830 100.0
Solyc05g026560.3 Solanum lycopersicum HOM05D006947 ORTHO05D008818 0.0e+00 1559.3 830 98.9
Nitab4.5_0000282g0010 Nicotiana tabacum HOM05D006947 ORTHO05D008818 0.0e+00 1271.5 836 81.0
Peaxi162Scf00376g00128 Petunia axillaris HOM05D006947 ORTHO05D008818 0.0e+00 1246.5 828 80.6
Dinv28045 Davidia involucrata HOM05D006947 ORTHO05D008818 2.9e-306 1055.0 819 68.9
CSS0036590 Camellia sinensis var. sinensis HOM05D006947 ORTHO05D008818 1.8e-284 982.6 820 64.3
Cc11_g08260 Coffea canephora HOM05D006947 ORTHO05D008818 1.5e-283 979.5 847 62.8
GSVIVG01011706001 Vitis vinifera HOM05D006947 ORTHO05D008818 6.7e-279 964.1 773 65.1
Hma1.2p1_0330F.1_g127400 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 8.7e-279 963.8 757 68.0
TAR622G0063 Trochodendron aralioides HOM05D006947 ORTHO05D008818 4.3e-278 961.4 831 62.2
Ciclev10014242m.g Citrus clementina HOM05D006947 ORTHO05D008818 5.9e-275 951.0 809 63.0
Gorai.002G176700 Gossypium raimondii HOM05D006947 ORTHO05D008818 1.2e-272 943.3 846 60.9
Haze_10941 Corylus avellana HOM05D006947 ORTHO05D008818 1.6e-272 943.0 802 63.3
Cfa014981 Carpinus fangiana HOM05D006947 ORTHO05D008818 1.4e-271 939.9 808 62.6
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 1.8e-268 929.5 770 64.5
CiPaw.06G048400 Carya illinoinensis HOM05D006947 ORTHO05D008818 2.4e-268 929.1 794 63.1
Gohir.D01G143300 Gossypium hirsutum HOM05D006947 ORTHO05D008818 1.2e-267 926.8 754 64.5
RcHm_v2.0_Chr4g0443581 Rosa chinensis HOM05D006947 ORTHO05D008818 2.0e-267 926.0 848 59.8
Lj6A742T64 Lonicera japonica HOM05D006947 ORTHO05D008818 2.9e-266 922.2 794 64.0
DCAR_026786 Daucus carota HOM05D006947 ORTHO05D008818 5.0e-266 921.4 756 64.0
Duzib251G0407 Durio zibethinus HOM05D006947 ORTHO05D008818 2.5e-265 919.1 843 60.0
FAN07G0937 Fragaria x ananassa HOM05D006947 ORTHO05D008818 5.5e-265 917.9 807 60.8
MD16G1022800 Malus domestica HOM05D006947 ORTHO05D008818 6.1e-264 914.4 833 59.8
TWI74G1199 Tripterygium wilfordii HOM05D006947 ORTHO05D008818 2.3e-263 912.5 814 60.4
Manes.17G080500 Manihot esculenta HOM05D006947 ORTHO05D008818 4.8e-261 904.8 854 57.0
FAN12G3265 Fragaria x ananassa HOM05D006947 ORTHO05D008818 1.1e-260 903.7 830 59.4
Potri.008G131900 Populus trichocarpa HOM05D006947 ORTHO05D008818 1.8e-260 902.9 841 58.1
MSTRG.907 Avicennia marina HOM05D006947 ORTHO05D008818 7.0e-260 901.0 792 62.0
Potri.010G110200 Populus trichocarpa HOM05D006947 ORTHO05D008818 7.7e-259 897.5 839 58.2
ClCG01G006350 Citrullus lanatus HOM05D006947 ORTHO05D008818 1.4e-257 893.3 811 60.8
Eucgr.B02936 Eucalyptus grandis HOM05D006947 ORTHO05D008818 1.6e-256 889.8 816 61.0
HanXRQChr12g0363561 Helianthus annuus HOM05D006947 ORTHO05D008818 8.0e-256 887.5 774 62.7
Sc14g0006260 Simmondsia chinensis HOM05D006947 ORTHO05D008818 5.2e-255 884.8 826 60.5
Sc14g0007020 Simmondsia chinensis HOM05D006947 ORTHO05D008818 6.3e-253 877.9 826 60.3
Sed0026926 Sechium edule HOM05D006947 ORTHO05D008818 1.1e-252 877.1 805 59.9
MELO3C005295.2 Cucumis melo HOM05D006947 ORTHO05D008818 1.8e-252 876.3 793 61.0
Atru.chr11.650 Acer truncatum HOM05D006947 ORTHO05D008818 1.6e-251 873.2 759 62.2
CsaV3_5G028330 Cucumis sativus L. HOM05D006947 ORTHO05D008818 5.9e-251 871.3 792 60.5
Sabra10G0080600 Salix brachista HOM05D006947 ORTHO05D008818 1.7e-250 869.8 761 60.6
QL03p033900 Quercus lobata HOM05D006947 ORTHO05D008818 9.4e-249 864.0 759 61.0
THA.LOC104822169 Tarenaya hassleriana HOM05D006947 ORTHO05D008818 2.0e-246 856.3 756 61.4
FvH4_4g34070 Fragaria vesca HOM05D006947 ORTHO05D008818 1.3e-245 853.6 720 62.4
Gohir.1Z015600 Gossypium hirsutum HOM05D006947 ORTHO05D008818 1.7e-245 853.2 844 56.9
ECA233G0254 Erigeron canadensis HOM05D006947 ORTHO05D008818 1.1e-244 850.5 757 62.0
PGR102G1367 Punica granatum HOM05D006947 ORTHO05D008818 5.3e-244 848.2 793 59.5
Lalb_Chr10g0096001 Lupinus albus HOM05D006947 ORTHO05D008818 1.6e-243 846.7 788 58.8
AUR62014176 Chenopodium quinoa HOM05D006947 ORTHO05D008818 5.0e-242 841.6 767 58.4
Glyma.09G120400 Glycine max HOM05D006947 ORTHO05D008818 9.4e-241 837.4 832 55.3
AUR62039529 Chenopodium quinoa HOM05D006947 ORTHO05D008818 1.2e-240 837.0 821 55.7
Lsat_1_v5_gn_8_44260 Lactuca sativa HOM05D006947 ORTHO05D008818 1.6e-240 836.6 776 58.5
Ah.03g137350 Amaranthus hybridus HOM05D006947 ORTHO05D008818 2.6e-238 829.3 808 56.6
EL10Ac6g14173 Beta vulgaris HOM05D006947 ORTHO05D008818 2.8e-237 825.9 827 55.3
CARHR023620 Cardamine hirsuta HOM05D006947 ORTHO05D008818 9.1e-236 820.8 762 58.7
Sp1g20640 Schrenkiella parvula HOM05D006947 ORTHO05D008818 1.2e-235 820.5 762 58.9
Migut.L00588 Erythranthe guttata HOM05D006947 ORTHO05D008818 2.0e-235 819.7 822 57.9
Thhalv10006791m.g Eutrema salsugineum HOM05D006947 ORTHO05D008818 3.5e-235 818.9 806 56.6
BcaB03g11927 Brassica carinata HOM05D006947 ORTHO05D008818 5.9e-235 818.1 799 56.2
C08p21780 Brassica napus HOM05D006947 ORTHO05D008818 7.7e-235 817.8 807 55.8
BraA08t34762Z Brassica rapa HOM05D006947 ORTHO05D008818 1.0e-234 817.4 808 56.2
Aa31LG7G7190 Aethionema arabicum HOM05D006947 ORTHO05D008818 5.0e-234 815.1 769 58.3
BolC8t49817H Brassica oleracea HOM05D006947 ORTHO05D008818 5.0e-234 815.1 808 55.8
AL1G36850 Arabidopsis lyrata HOM05D006947 ORTHO05D008818 6.6e-234 814.7 762 58.9
BcaC07g39188 Brassica carinata HOM05D006947 ORTHO05D008818 1.5e-233 813.5 808 55.7
Actinidia36648 Actinidia chinensis HOM05D006947 ORTHO05D008818 1.9e-233 813.1 832 57.5
A08p28310 Brassica napus HOM05D006947 ORTHO05D008818 3.3e-233 812.4 809 56.1
Rhsim09G0093800 Rhododendron simsii HOM05D006947 ORTHO05D008818 7.2e-233 811.2 795 58.2
arahy.Tifrunner.gnm1.ann1.573L1D Arachis hypogaea HOM05D006947 ORTHO05D008818 9.5e-233 810.8 754 58.4
AT1G23180 Arabidopsis thaliana HOM05D006947 ORTHO05D008818 1.6e-232 810.1 762 58.4
Ca_12591_v3 Cicer arietinum L. HOM05D006947 ORTHO05D008818 1.0e-231 807.4 775 56.5
Hund24964 Selenicereus undatus HOM05D006947 ORTHO05D008818 1.8e-231 806.6 814 54.4
Carub.0001s2275 Capsella rubella HOM05D006947 ORTHO05D008818 8.9e-231 804.3 805 56.3
Phvul.003G022200 Phaseolus vulgaris HOM05D006947 ORTHO05D008818 1.5e-230 803.5 757 58.3
CANSAT01G1138 Cannabis sativa HOM05D006947 ORTHO05D008818 2.6e-230 802.7 770 57.0
Nitab4.5_0000018g0180 Nicotiana tabacum HOM05D006947 ORTHO05D008818 1.7e-229 800.0 571 76.0
arahy.Tifrunner.gnm1.ann1.8B134P Arachis hypogaea HOM05D006947 ORTHO05D008818 1.2e-227 793.9 760 57.1
Gohir.A01G150136 Gossypium hirsutum HOM05D006947 ORTHO05D008818 4.5e-227 792.0 844 54.0
Aqoxy3G04093 Aquilegia oxysepala HOM05D006947 ORTHO05D008818 3.9e-226 788.9 761 58.5
VMungo1215G1110 Vigna mungo HOM05D006947 ORTHO05D008818 3.7e-221 772.3 835 53.3
TPR.G36974 Trifolium pratense HOM05D006947 ORTHO05D008818 4.9e-221 771.9 765 55.6
Medtr1g031750 Medicago truncatula HOM05D006947 ORTHO05D008818 7.3e-217 758.1 758 55.7
ATR0317G087 Amborella trichopoda HOM05D006947 ORTHO05D008818 2.1e-211 740.0 759 54.4
MBI15_g36991_MAGBIO Magnolia biondii HOM05D006947 ORTHO05D008818 6.8e-207 724.9 715 55.8
Thecc.02G287500 Theobroma cacao HOM05D006947 ORTHO05D008818 1.2e-200 704.1 638 60.3
unitig_52.g17412 Utricularia gibba HOM05D006947 ORTHO05D008818 1.1e-199 701.0 702 54.6
Os01g0524700 Oryza sativa ssp. japonica HOM05D006947 ORTHO05D008818 2.9e-197 693.0 778 48.2
HPP92_024592 Vanilla planifolia HOM05D006947 ORTHO05D008818 2.4e-196 689.9 798 50.0
SalBow8G5231 Salvia bowleyana HOM05D006947 ORTHO05D008818 1.3e-184 651.0 587 61.5
vmacro10663 Vaccinium macrocarpon HOM05D006947 ORTHO05D008818 8.1e-184 648.3 770 50.9
CDE11G0632 Ceratophyllum demersum HOM05D006947 ORTHO05D008818 4.5e-182 642.5 811 46.7
Hma1.2p1_0330F.1_g127410 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 2.6e-174 616.7 475 67.8
HPP92_024520 Vanilla planifolia HOM05D006947 ORTHO05D008818 1.6e-171 607.4 795 46.2
Migut.O00818 Erythranthe guttata HOM05D006947 ORTHO05D008818 4.3e-169 599.4 586 59.4
Prupe.1G330100 Prunus persica HOM05D006947 ORTHO05D008818 2.4e-167 593.6 532 60.0
Lj2g0020590 Lotus japonicus HOM05D006947 ORTHO05D008818 3.0e-162 576.6 596 54.4
MBI15_g41220_MAGBIO Magnolia biondii HOM05D006947 ORTHO05D008818 2.2e-157 560.5 715 47.4
Psat6g044440 Pisum sativum HOM05D006947 ORTHO05D008818 6.5e-157 558.9 600 53.0
Cpa.g.sc2.239 Carica papaya HOM05D006947 ORTHO05D008818 3.8e-149 533.1 633 49.8
Glyma.07G166300 Glycine max HOM05D006947 ORTHO05D008818 1.5e-145 521.2 440 60.5
Oeu023430.2 Olea europaea HOM05D006947 ORTHO05D008818 6.3e-136 489.2 873 40.3
PSO063G5930 Papaver somniferum HOM05D006947 ORTHO05D008818 2.4e-135 487.3 497 53.9
PSO782G4825 Papaver somniferum HOM05D006947 ORTHO05D008818 2.4e-135 487.3 512 52.3
Pp3c18_19500 Physcomitrium patens HOM05D006947 ORTHO05D008818 4.3e-108 396.7 804 34.8
Nitab4.5_0000532g0040 Nicotiana tabacum HOM05D006947 ORTHO05D008818 5.4e-103 379.8 294 71.4
PGSC0003DMG400015903 Solanum tuberosum HOM05D006947 ORTHO05D008818 2.0e-102 377.9 206 95.6
Hma1.2p1_0330F.1_g127420 Hydrangea macrophylla HOM05D006947 ORTHO05D008818 3.6e-99 367.1 282 69.5
Nitab4.5_0000532g0050 Nicotiana tabacum HOM05D006947 ORTHO05D008818 2.9e-96 357.5 264 72.7
Nn4g24252 Nelumbo nucifera HOM05D006947 ORTHO05D008818 4.1e-95 353.6 829 33.3
AagrBONN_evm.TU.Sc2ySwM_117.3643 Anthoceros agrestis HOM05D006947 ORTHO05D008818 2.2e-80 304.7 364 47.3
Mapoly0112s0009 Marchantia polymorpha HOM05D006947 ORTHO05D008818 2.4e-71 274.6 619 32.3
SalBow8G4359 Salvia bowleyana HOM05D006947 ORTHO05D008818 3.1e-66 257.7 213 60.6
Cpa.g.sc1084.1 Carica papaya HOM05D006947 ORTHO05D008818 9.3e-63 246.1 205 62.0
MD13G1021800 Malus domestica HOM05D006947 ORTHO05D008818 8.7e-53 213.0 218 54.6
CBR_g50426 Chara braunii HOM05D006947 ORTHO05D008818 9.6e-52 209.5 841 25.9
GSVIVG01031683001 Vitis vinifera HOM05D006947 ORTHO05D005406 9.4e-23 113.2 150 44.0
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 2.7e-22 111.7 147 44.2
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 2.7e-14 85.1 103 47.6
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 2.7e-14 85.1 93 48.4
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 8.0e-14 83.6 114 44.7
Oeu059516.1 Olea europaea HOM05D001630 ORTHO05D002505 9.8e-12 76.6 65 61.5
Lsat_1_v5_gn_4_154640 Lactuca sativa HOM05D001865 ORTHO05D001815 2.5e-07 62.0 188 27.1
HanXRQChr11g0324271 Helianthus annuus HOM05D001865 ORTHO05D001815 3.6e-06 58.2 225 28.4


User provided reference genes

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