Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 2133.2 1102 100.0
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 2097.4 1118 97.6
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1946.4 1102 91.1
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1765.4 1370 71.6
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1713.7 1070 84.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1697.9 914 96.6
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1666.0 1106 79.7
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1503.8 1119 68.2
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1481.8 1127 68.1
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1474.9 1111 67.6
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1474.1 1127 67.1
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1462.2 1124 66.7
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1460.7 1121 66.2
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1459.5 1119 67.0
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1455.3 1111 67.2
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1451.8 1151 65.7
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1432.2 1118 66.0
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1429.5 1124 65.1
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1421.4 1191 63.3
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1417.9 1002 69.8
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1417.1 1105 65.5
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1417.1 1131 63.6
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1412.9 1116 65.1
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1411.0 1128 64.8
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1410.2 1123 64.1
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1408.3 1124 64.6
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1406.7 1111 65.3
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1405.6 1117 64.0
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1405.6 1131 64.5
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1404.4 1231 60.8
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1402.9 1100 65.5
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1402.5 1115 64.3
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1400.6 1121 64.7
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1396.7 1117 64.5
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1392.5 1121 64.3
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1390.6 1115 63.7
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1386.3 1111 64.1
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1382.5 1096 64.2
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1380.2 1099 64.1
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1379.0 1113 64.0
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1372.1 1112 63.9
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1368.2 1122 63.7
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1363.2 1123 63.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1346.6 1123 62.6
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1346.6 1134 61.6
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1346.3 1113 63.1
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1345.9 1111 62.9
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1340.5 1116 61.7
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1337.8 1100 62.7
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1336.6 1100 62.3
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1333.5 1109 63.0
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1328.2 1114 61.4
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1328.2 1102 63.1
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1326.2 1065 63.8
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1325.1 1107 62.9
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1323.5 1114 61.5
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1321.2 1107 62.1
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1319.3 1117 61.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1318.1 1003 66.5
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1315.8 1099 62.6
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1315.8 1111 61.4
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1315.1 1113 60.6
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1310.4 1106 62.2
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1308.1 1066 62.3
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1307.7 1100 62.5
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1307.4 1106 62.3
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1292.3 1080 60.6
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1288.9 1101 60.8
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1288.1 1080 60.5
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1286.9 1054 61.1
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1286.6 1031 62.6
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1286.6 1110 60.0
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1285.0 1031 62.3
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1285.0 1102 59.7
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1281.9 1124 59.3
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1281.2 1099 60.9
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1280.0 1099 59.6
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1278.5 1104 61.4
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1277.7 1066 61.1
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1277.3 1079 60.6
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1275.0 1074 60.1
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1270.4 1077 60.0
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1267.3 1082 60.4
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1266.1 1067 59.9
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1264.6 1066 59.8
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1263.1 1118 59.8
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1262.3 1115 60.4
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1262.3 1087 59.4
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1261.9 1108 60.0
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1258.0 1089 60.1
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1252.3 1128 60.1
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1246.5 1093 58.8
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1225.7 1122 58.7
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1204.9 1038 58.8
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1183.7 1074 57.4
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1179.1 914 65.0
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1172.9 1042 58.6
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1153.7 975 59.2
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1139.4 1061 56.2
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1137.1 1076 54.8
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1122.8 1033 54.9
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 7.5e-312 1074.7 1064 54.0
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 9.7e-310 1067.0 1071 54.9
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 2.2e-309 1065.8 892 62.7
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 2.4e-300 1035.8 818 65.0
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 5.5e-297 1024.6 953 55.5
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.7e-296 1021.5 677 73.4
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.8e-287 993.0 1120 50.0
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 1.1e-284 983.8 1078 49.4
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 7.1e-268 927.9 1046 47.9
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 9.5e-265 917.5 783 61.4
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 4.0e-263 912.1 962 48.4
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 1.5e-246 857.1 1002 46.6
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 3.2e-228 796.2 635 64.1
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.1e-215 753.1 547 70.2
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.1e-215 753.1 547 70.2
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.3e-215 752.3 572 66.4
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.8e-199 700.7 1045 39.1
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.1e-151 542.0 388 71.1
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.5e-103 380.2 206 94.7
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 3.0e-93 347.8 397 49.6
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 6.8e-61 240.4 201 60.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 4.4e-60 237.7 599 27.9
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.0e-56 226.5 143 74.1
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.8e-56 224.6 176 72.7
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 5.0e-48 197.6 165 59.4
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 3.4e-44 184.9 171 59.1
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.4e-42 178.7 203 48.3
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.9e-39 169.1 104 83.7
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 8.1e-38 163.7 121 71.9
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.8e-37 162.5 173 52.6
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 4.4e-36 157.9 368 31.0
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 7.8e-33 147.1 628 23.2
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 5.6e-31 141.0 151 51.0
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 2.5e-23 115.5 84 72.6
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 8.9e-21 107.1 94 53.2
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 2.9e-19 102.1 95 66.3
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.0e-17 94.4 77 70.1
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 6.0e-17 94.4 244 27.9
Solyc05g023600.3 Solanum lycopersicum HOM05D004682 ORTHO05D006197 3.0e-16 92.0 136 44.1
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 2.1e-14 85.9 82 51.2
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 3.6e-14 85.1 303 27.4
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 6.2e-14 84.3 127 45.7
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 9.0e-13 80.5 87 56.3
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 2.6e-12 79.0 39 92.3
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.8e-11 75.1 68 54.4
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 4.2e-10 71.6 50 72.0
Solyc03g150123.1 Solanum lycopersicum HOM05D004682 ORTHO05D026176 2.1e-09 69.3 58 62.1
Solyc09g037050.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.0e-08 67.0 58 60.3
Sopen11g012770 Solanum pennellii HOM05D056827 ORTHO05D026186 1.3e-08 66.6 107 45.8
Sopen07g009810 Solanum pennellii HOM05D004682 ORTHO05D026186 1.9e-07 62.8 62 61.3
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.9e-07 62.8 71 47.9
PGSC0003DMG400005431 Solanum tuberosum HOM05D017937 ORTHO05D026186 3.3e-07 62.0 81 48.1


User provided reference genes

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