Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.2e-70 269.6 128 100.0
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.0e-20 102.8 58 79.3
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.8e-19 98.2 50 84.0
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 6.3e-19 97.8 50 84.0
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 84.0
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 8.2e-19 97.4 50 86.0
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 82.0
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 82.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.1e-18 97.1 50 84.0
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.8e-18 96.3 50 84.0
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.8e-18 96.3 50 82.0
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.8e-18 96.3 50 84.0
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 1.8e-18 96.3 50 84.0
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.4e-18 95.9 50 82.0
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.4e-18 95.9 50 82.0
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 4.1e-18 95.1 53 79.2
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 4.1e-18 95.1 50 82.0
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 4.1e-18 95.1 50 82.0
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.1e-18 95.1 50 82.0
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.3e-18 94.7 50 80.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.3e-18 94.7 50 80.0
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 5.3e-18 94.7 50 80.0
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 5.3e-18 94.7 50 82.0
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 5.3e-18 94.7 50 82.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 5.3e-18 94.7 50 82.0
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 5.3e-18 94.7 50 82.0
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 82.0
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 7.0e-18 94.4 49 83.7
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 82.0
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 82.0
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 82.0
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 82.0
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 80.0
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 82.0
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 80.0
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 7.0e-18 94.4 50 82.0
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 9.1e-18 94.0 50 82.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 9.1e-18 94.0 50 82.0
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 9.1e-18 94.0 50 82.0
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 9.1e-18 94.0 50 82.0
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 9.1e-18 94.0 50 80.0
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 9.1e-18 94.0 50 80.0
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.2e-17 93.6 50 80.0
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.6e-17 93.2 50 82.0
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.6e-17 93.2 50 80.0
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.0e-17 92.8 50 78.0
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.0e-17 92.8 50 78.0
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 2.0e-17 92.8 50 80.0
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 2.0e-17 92.8 50 78.0
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 2.0e-17 92.8 50 78.0
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.6e-17 92.4 50 80.0
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.5e-17 92.0 50 78.0
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 4.5e-17 91.7 50 80.0
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.5e-17 91.7 52 80.8
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 4.5e-17 91.7 50 80.0
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 4.5e-17 91.7 50 80.0
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.5e-17 91.7 50 78.0
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 80.0
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 80.0
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 78.0
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 78.0
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 78.0
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 78.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 80.0
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 80.0
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.9e-17 91.3 50 78.0
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.0e-16 90.5 52 78.8
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.3e-16 90.1 50 78.0
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.7e-16 89.7 50 78.0
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.7e-16 89.7 52 76.9
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 2.9e-16 89.0 50 78.0
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 3.8e-16 88.6 50 78.0
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 3.8e-16 88.6 52 76.9
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 5.0e-16 88.2 50 76.0
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 5.0e-16 88.2 50 76.0
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 5.0e-16 88.2 50 76.0
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 5.0e-16 88.2 50 76.0
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 5.0e-16 88.2 52 76.9
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 5.0e-16 88.2 52 76.9
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 6.5e-16 87.8 52 75.0
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.1e-15 87.0 52 75.0
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-15 87.0 70 60.0
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.5e-15 86.7 52 75.0
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.9e-15 86.3 50 70.0
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.5e-15 85.9 50 74.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.2e-15 85.5 50 74.0
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.2e-15 85.1 51 74.5
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.2e-15 85.1 55 70.9
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.2e-15 85.1 52 75.0
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.2e-15 85.1 52 75.0
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 7.2e-15 84.3 50 72.0
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 4.7e-14 81.6 50 68.0
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 6.1e-14 81.3 50 66.0
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 6.1e-14 81.3 50 68.0
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.3e-13 79.3 50 64.0
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 6.8e-13 77.8 50 64.0
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 8.8e-13 77.4 50 64.0
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 4.4e-12 75.1 43 76.7
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.3e-11 73.6 49 59.2
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-10 70.5 57 57.9
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.4e-10 69.3 36 77.8
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 2.7e-09 65.9 52 55.8
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.7e-08 63.2 35 74.3
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.9e-07 59.7 53 52.8
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.6e-06 56.6 29 82.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.6e-06 56.6 53 49.1


User provided reference genes

Program Settings