Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.9e-33 145.2 69 100.0
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.7e-15 85.5 46 82.6
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 6.6e-15 83.6 55 70.9
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 6.6e-15 83.6 63 63.5
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.1e-14 82.8 41 87.8
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.1e-14 82.8 55 72.7
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.5e-14 82.4 59 67.8
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.9e-14 82.0 55 72.7
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.9e-14 82.0 55 72.7
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.9e-14 82.0 50 74.0
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.9e-14 82.0 53 73.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.9e-14 82.0 53 73.6
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.9e-14 82.0 43 83.7
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.5e-14 81.6 54 72.2
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.5e-14 81.6 54 72.2
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.5e-14 81.6 55 72.7
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.5e-14 81.6 43 83.7
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.5e-14 81.6 58 70.7
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 2.5e-14 81.6 43 83.7
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.5e-14 81.6 43 83.7
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 2.5e-14 81.6 50 76.0
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 2.5e-14 81.6 55 70.9
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.5e-14 81.6 55 70.9
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.5e-14 81.6 43 83.7
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 2.5e-14 81.6 43 83.7
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 2.5e-14 81.6 50 76.0
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 2.5e-14 81.6 50 76.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 2.5e-14 81.6 50 76.0
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 2.5e-14 81.6 43 83.7
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.5e-14 81.6 43 83.7
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 3.3e-14 81.3 43 83.7
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 3.3e-14 81.3 43 83.7
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.3e-14 81.3 50 74.0
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.3e-14 81.3 50 74.0
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.3e-14 81.3 50 74.0
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.3e-14 81.3 50 74.0
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.3e-14 81.3 50 74.0
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.3e-14 81.3 50 74.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.3e-14 81.3 50 74.0
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 3.3e-14 81.3 43 83.7
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.3e-14 81.3 43 83.7
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.3e-14 81.3 43 83.7
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.3e-14 81.3 43 83.7
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 3.3e-14 81.3 43 83.7
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 4.3e-14 80.9 59 66.1
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 4.3e-14 80.9 59 66.1
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 4.3e-14 80.9 59 66.1
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.3e-14 80.9 43 81.4
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.3e-14 80.9 43 81.4
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 4.3e-14 80.9 68 63.2
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.3e-14 80.9 56 67.9
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.3e-14 80.9 53 71.7
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 4.3e-14 80.9 56 67.9
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 4.3e-14 80.9 43 81.4
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 5.6e-14 80.5 46 80.4
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 76.0
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.6e-14 80.5 50 74.0
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 5.6e-14 80.5 46 80.4
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 5.6e-14 80.5 46 80.4
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 5.6e-14 80.5 49 75.5
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 5.6e-14 80.5 55 69.1
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 7.3e-14 80.1 39 89.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 7.3e-14 80.1 68 61.8
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 7.3e-14 80.1 50 72.0
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 7.3e-14 80.1 39 89.7
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 7.3e-14 80.1 55 70.9
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 7.3e-14 80.1 43 81.4
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 7.3e-14 80.1 39 89.7
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 7.3e-14 80.1 39 89.7
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 9.6e-14 79.7 46 78.3
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 9.6e-14 79.7 55 69.1
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 9.6e-14 79.7 59 66.1
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 9.6e-14 79.7 67 62.7
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.3e-13 79.3 55 67.3
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.3e-13 79.3 43 81.4
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.3e-13 79.3 57 68.4
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.6e-13 79.0 39 87.2
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.6e-13 79.0 43 79.1
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.6e-13 79.0 43 79.1
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.6e-13 79.0 43 81.4
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.6e-13 79.0 63 65.1
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.6e-13 79.0 43 81.4
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.6e-13 79.0 53 66.0
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.6e-13 79.0 43 79.1
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 2.1e-13 78.6 43 81.4
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 2.1e-13 78.6 43 81.4
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.1e-13 78.6 62 64.5
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 2.1e-13 78.6 50 74.0
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 2.1e-13 78.6 50 74.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 2.1e-13 78.6 43 81.4
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.1e-13 78.6 43 79.1
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.1e-13 78.6 53 67.9
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.8e-13 78.2 62 66.1
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.8e-13 78.2 43 81.4
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.8e-13 78.2 43 81.4
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.8e-13 78.2 43 81.4
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.8e-13 78.2 39 84.6
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.8e-13 78.2 39 82.1
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 2.8e-13 78.2 58 65.5
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.8e-13 78.2 49 75.5
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.6e-13 77.8 39 84.6
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.6e-13 77.8 39 84.6
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 3.6e-13 77.8 53 69.8
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.6e-13 77.8 39 84.6
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 3.6e-13 77.8 39 84.6
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.8e-13 77.4 38 86.8
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.8e-13 77.4 66 62.1
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 6.2e-13 77.0 39 87.2
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.2e-13 77.0 39 87.2
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.2e-13 77.0 39 87.2
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 6.2e-13 77.0 43 79.1
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 6.2e-13 77.0 43 76.7
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.1e-13 76.6 39 82.1
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.1e-13 76.6 39 82.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 8.1e-13 76.6 65 64.6
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-12 76.3 43 74.4
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.1e-12 76.3 43 76.7
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.1e-12 76.3 43 76.7
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.1e-12 76.3 38 84.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.1e-12 76.3 38 84.2
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.4e-12 75.9 50 72.0
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.4e-12 75.9 43 79.1
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.4e-12 75.9 39 84.6
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.4e-12 75.9 53 64.2
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.8e-12 75.5 43 76.7
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 3.1e-12 74.7 39 82.1
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.1e-12 74.7 43 74.4
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.1e-12 74.7 43 74.4
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.1e-12 74.7 62 59.7
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.2e-11 72.8 43 74.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.5e-11 72.4 68 55.9
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.6e-11 71.6 65 56.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.4e-11 71.2 70 55.7
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 7.6e-11 70.1 64 57.8
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 9.9e-11 69.7 68 48.5
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.9e-10 68.2 39 74.4
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.9e-10 68.2 67 49.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.1e-09 66.2 64 51.6
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.1e-09 66.2 62 54.8
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.1e-09 66.2 39 71.8
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.2e-08 62.8 35 80.0
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 3.5e-08 61.2 43 60.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.3e-07 59.3 29 82.8
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.8e-07 58.9 65 50.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.8e-07 58.9 39 66.7


User provided reference genes

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