Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 4.4e-74 281.2 139 100.0
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.1e-19 99.0 158 43.0
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.9e-19 97.4 158 42.4
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.5e-18 96.7 158 42.4
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.0e-18 96.3 154 41.6
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.0e-18 96.3 158 41.8
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 2.6e-18 95.9 158 41.8
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 3.4e-18 95.5 158 41.8
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 4.4e-18 95.1 158 41.8
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 4.4e-18 95.1 158 42.4
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 4.4e-18 95.1 158 41.8
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.8e-18 94.7 158 41.1
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 5.8e-18 94.7 158 41.1
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 7.6e-18 94.4 149 43.0
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 9.9e-18 94.0 158 40.5
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 9.9e-18 94.0 158 41.1
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 9.9e-18 94.0 158 41.1
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 9.9e-18 94.0 160 41.9
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 2.2e-17 92.8 158 39.2
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.2e-17 92.8 187 38.0
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 2.2e-17 92.8 187 37.4
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.9e-17 92.4 158 40.5
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.8e-17 92.0 158 39.9
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.8e-17 92.0 158 39.9
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 3.8e-17 92.0 158 40.5
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 4.9e-17 91.7 158 39.9
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 6.4e-17 91.3 158 40.5
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.4e-17 90.9 158 39.9
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 8.4e-17 90.9 158 39.2
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 8.4e-17 90.9 158 39.2
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 8.4e-17 90.9 158 39.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 8.4e-17 90.9 158 39.2
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 8.4e-17 90.9 158 40.5
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 8.4e-17 90.9 158 40.5
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 8.4e-17 90.9 157 39.5
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 8.4e-17 90.9 157 39.5
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 8.4e-17 90.9 158 39.2
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.1e-16 90.5 160 38.8
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.1e-16 90.5 158 39.9
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 1.1e-16 90.5 158 39.9
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.1e-16 90.5 154 40.9
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.1e-16 90.5 158 40.5
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.4e-16 90.1 158 38.6
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 1.4e-16 90.1 158 40.5
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.4e-16 89.4 156 39.1
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 2.4e-16 89.4 158 38.0
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.4e-16 89.4 158 39.9
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 2.4e-16 89.4 156 38.5
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.2e-16 89.0 158 38.6
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.2e-16 89.0 158 39.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.2e-16 89.0 158 39.9
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 3.2e-16 89.0 158 39.9
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 3.2e-16 89.0 157 39.5
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.2e-16 89.0 158 39.9
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 4.2e-16 88.6 152 40.1
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 4.2e-16 88.6 158 39.2
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 4.2e-16 88.6 158 38.6
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 5.4e-16 88.2 158 38.6
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 7.1e-16 87.8 158 38.6
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 7.1e-16 87.8 158 39.9
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 7.1e-16 87.8 158 39.9
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.3e-16 87.4 121 44.6
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 9.3e-16 87.4 158 38.0
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 9.3e-16 87.4 158 39.2
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 9.3e-16 87.4 158 38.0
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 9.3e-16 87.4 158 38.0
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 9.3e-16 87.4 158 38.6
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 1.2e-15 87.0 158 39.2
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.2e-15 87.0 158 38.6
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.2e-15 87.0 158 38.6
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.6e-15 86.7 158 39.9
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 1.6e-15 86.7 158 39.2
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.6e-15 86.7 158 38.6
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.6e-15 86.7 158 39.2
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.6e-15 86.7 158 38.6
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 2.1e-15 86.3 158 38.0
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 2.1e-15 86.3 158 39.9
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 2.1e-15 86.3 158 39.2
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.7e-15 85.9 158 38.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.7e-15 85.9 158 38.0
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.7e-15 85.9 158 37.3
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 2.7e-15 85.9 158 38.6
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 3.5e-15 85.5 158 37.3
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 1.3e-14 83.6 158 38.0
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 2.3e-14 82.8 158 36.7
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 5.1e-14 81.6 150 38.0
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 5.1e-14 81.6 158 38.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 8.7e-14 80.9 150 40.7
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.3e-13 78.6 171 35.1
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.3e-12 77.0 157 37.6
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-11 72.4 65 58.5
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 3.4e-10 68.9 96 44.8
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 9.9e-10 67.4 159 32.1
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.7e-09 66.6 75 53.3
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 1.7e-09 66.6 98 39.8
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.7e-09 66.6 98 39.8
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.7e-09 66.6 121 37.2
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.9e-09 65.9 118 39.0
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.8e-09 65.5 118 39.0
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-09 65.5 118 38.1
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 3.8e-09 65.5 118 38.1
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 3.8e-09 65.5 118 38.1
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 3.8e-09 65.5 118 38.1
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 3.8e-09 65.5 118 38.1
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.8e-09 65.5 118 38.1
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.9e-09 65.1 118 38.1
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 6.4e-09 64.7 118 38.1
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 6.4e-09 64.7 119 37.0
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 6.4e-09 64.7 119 37.8
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 8.4e-09 64.3 118 38.1
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.1e-08 63.9 94 40.4
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.1e-08 63.9 95 42.1
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.4e-08 63.5 90 44.4
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.4e-08 63.5 95 41.1
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 1.4e-08 63.5 118 38.1
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 1.4e-08 63.5 118 36.4
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.9e-08 63.2 90 44.4
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 1.9e-08 63.2 118 39.0
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.9e-08 63.2 90 44.4
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.4e-08 62.8 118 37.3
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 2.4e-08 62.8 118 38.1
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.4e-08 62.8 90 44.4
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 3.2e-08 62.4 55 60.0
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 3.2e-08 62.4 118 36.4
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 3.2e-08 62.4 92 43.5
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 4.2e-08 62.0 90 43.3
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 4.2e-08 62.0 119 34.5
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 4.2e-08 62.0 118 39.0
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 4.2e-08 62.0 118 39.0
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 4.2e-08 62.0 90 43.3
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 5.4e-08 61.6 90 44.4
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.4e-08 61.6 118 35.6
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 5.4e-08 61.6 90 45.6
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 5.4e-08 61.6 118 35.6
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 5.4e-08 61.6 90 43.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 7.1e-08 61.2 118 37.3
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 7.1e-08 61.2 118 36.4
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 7.1e-08 61.2 90 42.2
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.2e-07 60.5 90 42.2
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.2e-07 60.5 118 37.3
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.6e-07 60.1 90 42.2
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.1e-07 59.7 90 41.1
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 3.5e-07 58.9 119 34.5
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.3e-06 56.2 119 34.5
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 2.3e-06 56.2 90 40.0
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 2.3e-06 56.2 118 33.9
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 3.0e-06 55.8 118 32.2


User provided reference genes

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