Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.1e-265 919.5 500 100.0
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.5e-228 795.4 440 99.3
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 4.8e-224 781.2 501 87.8
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.7e-200 703.0 503 77.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.4e-199 699.9 502 77.3
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.6e-198 696.4 507 75.7
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.7e-198 695.7 493 77.3
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 6.6e-197 691.0 501 76.4
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 6.2e-195 684.5 500 76.4
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 2.3e-194 682.6 502 75.1
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 3.1e-194 682.2 501 75.6
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 8.9e-194 680.6 497 76.9
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.5e-193 679.9 497 76.7
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.4e-193 678.3 501 74.5
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 7.5e-193 677.6 500 74.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 2.9e-192 675.6 501 72.9
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.2e-191 672.2 504 74.0
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 3.5e-190 668.7 502 73.9
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 6.0e-190 667.9 500 74.6
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 7.8e-190 667.5 501 72.9
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 1.3e-189 666.8 497 75.1
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.3e-189 666.8 482 76.3
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.3e-189 666.0 511 74.2
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 3.9e-189 665.2 496 72.4
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.5e-188 663.3 501 73.5
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 4.3e-188 661.8 505 74.1
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.6e-188 661.4 499 74.5
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 7.3e-188 661.0 498 74.9
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.1e-187 659.4 502 73.3
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 3.6e-187 658.7 497 73.4
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 3.6e-187 658.7 506 72.9
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.1e-186 657.1 500 72.8
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.4e-186 656.8 504 74.2
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.3e-186 656.0 500 72.6
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.2e-186 654.8 518 69.9
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 6.8e-186 654.4 492 73.8
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 6.8e-186 654.4 499 72.9
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.0e-185 652.9 499 72.7
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 4.4e-185 651.7 498 74.1
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 4.4e-185 651.7 495 72.3
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 7.5e-185 651.0 504 73.6
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-184 649.8 528 68.6
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 6.4e-184 647.9 491 72.9
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 8.3e-184 647.5 503 74.0
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.4e-183 646.7 504 72.4
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 5.4e-183 644.8 501 72.7
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-182 643.7 505 72.3
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-182 643.7 504 71.6
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.7e-182 642.5 505 70.1
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.5e-182 642.1 380 92.4
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.5e-182 642.1 525 70.3
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 6.0e-182 641.3 470 74.5
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.3e-181 639.4 499 71.1
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 3.9e-181 638.6 485 71.3
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 6.6e-181 637.9 504 71.2
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.5e-180 636.7 505 72.9
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 4.3e-180 635.2 501 70.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.2e-179 633.6 499 70.3
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-179 633.3 505 72.5
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.6e-179 633.3 499 71.3
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 3.6e-179 632.1 502 70.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 3.6e-179 632.1 492 70.5
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 6.2e-179 631.3 485 71.5
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 6.2e-179 631.3 510 70.2
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.1e-178 630.6 491 72.1
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.8e-178 629.8 502 70.5
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 3.1e-178 629.0 497 71.4
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 5.2e-178 628.2 484 70.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 7.6e-177 624.4 512 68.0
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.2e-176 622.9 497 70.2
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 8.4e-176 620.9 503 68.2
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.7e-174 615.9 420 80.2
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.7e-174 615.9 503 68.8
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 6.0e-174 614.8 509 67.8
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 7.8e-174 614.4 509 68.4
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.3e-173 613.6 497 69.0
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-173 613.2 496 68.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 5.1e-173 611.7 509 67.8
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 2.5e-172 609.4 502 69.5
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.3e-172 608.6 513 67.3
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.3e-172 607.8 473 74.0
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 9.6e-172 607.4 509 67.6
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 9.6e-172 607.4 503 68.4
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.6e-171 606.7 502 69.3
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 3.4e-169 599.0 500 67.2
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 3.4e-169 599.0 374 90.4
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 3.4e-169 599.0 493 68.0
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 7.6e-169 597.8 495 68.5
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 7.6e-169 597.8 509 67.4
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 4.9e-168 595.1 505 67.5
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 6.4e-168 594.7 495 67.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 8.4e-168 594.3 494 67.4
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.1e-167 594.0 496 67.1
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.1e-166 589.7 441 73.9
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.7e-166 589.3 507 65.9
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 4.6e-166 588.6 481 67.8
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 6.0e-166 588.2 493 67.7
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 5.6e-164 581.6 514 65.0
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.4e-162 576.2 520 64.6
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 4.0e-162 575.5 504 65.5
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.4e-159 567.0 504 64.5
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.2e-158 563.9 502 61.8
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.6e-158 563.5 499 62.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 6.7e-157 558.1 495 62.2
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.8e-149 533.5 393 80.2
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 3.9e-149 532.3 537 60.9
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.8e-147 526.2 490 62.7
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.0e-144 517.7 494 63.2
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 8.4e-144 514.6 356 79.5
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 7.1e-143 511.5 479 61.4
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.7e-134 483.0 472 57.6
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 8.5e-128 461.5 492 57.9
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 5.5e-127 458.8 502 54.2
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 2.8e-123 446.4 389 63.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.8e-122 443.7 461 59.2
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 9.1e-114 414.8 406 58.4
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 2.8e-107 393.3 496 53.0
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 5.4e-98 362.5 206 88.8
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 7.0e-98 362.1 388 57.7
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 7.0e-98 362.1 388 57.7
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 8.3e-91 338.6 425 50.6
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.6e-89 334.3 499 45.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.2e-86 324.7 253 75.5
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 4.9e-83 312.8 324 53.1
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 7.8e-81 305.4 352 51.1
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.2e-77 292.7 219 71.7
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 8.3e-75 285.4 378 45.8
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.0e-72 276.9 221 68.8
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 5.4e-58 229.6 202 65.3
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 8.7e-56 222.2 270 53.0
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.5e-55 221.5 359 41.2
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.2e-51 207.6 397 36.8
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.2e-50 203.8 348 38.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-45 188.7 164 63.4
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.1e-38 164.5 96 82.3
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 3.4e-36 157.1 135 67.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 4.5e-36 156.8 91 82.4
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.2e-33 148.7 106 63.2
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 5.7e-31 139.8 290 39.0
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.7e-30 137.1 87 78.2
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.3e-22 109.8 158 45.6
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 9.0e-21 105.9 185 40.0
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.0e-20 104.8 122 51.6
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.9e-17 92.8 94 55.3
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.6e-12 77.8 60 65.0
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.6e-12 77.8 60 65.0
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 6.5e-11 73.2 37 97.3
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.5e-10 71.2 60 60.0
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.1e-09 68.2 71 57.7
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.8e-08 65.1 59 64.4
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.3e-08 64.7 65 55.4
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.5e-07 62.0 50 70.0


User provided reference genes

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