Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 3148.2 1609 100.0
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2543.1 1596 80.2
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2496.5 1596 79.3
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2478.4 1607 78.2
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2473.0 1587 77.9
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2466.0 1594 76.7
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2456.0 1597 77.9
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2445.6 1581 77.4
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2445.2 1591 76.8
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2444.5 1591 76.6
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2441.0 1582 77.1
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2423.7 1595 76.5
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2421.4 1591 75.7
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2419.8 1622 75.8
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2416.0 1587 77.3
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2416.0 1501 80.9
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2415.6 1592 76.3
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2406.3 1597 75.1
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2400.5 1581 75.5
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2400.5 1663 74.1
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2388.6 1581 75.0
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2378.6 1596 74.1
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2377.8 1594 74.4
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2377.8 1594 74.1
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2377.1 1593 75.0
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2376.3 1584 74.1
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2371.7 1609 73.7
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2369.7 1582 74.3
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2348.9 1609 73.3
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2348.9 1577 73.7
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2343.9 1613 74.5
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2342.8 1591 73.2
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2342.4 1607 72.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2341.2 1583 73.5
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2338.5 1522 76.7
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2335.1 1593 72.8
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2333.1 1584 74.2
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2332.0 1595 74.9
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2319.7 1584 72.7
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2319.3 1599 72.6
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2312.0 1606 72.0
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2303.5 1587 72.4
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2288.5 1589 71.6
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2287.7 1614 71.1
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2276.1 1585 71.0
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2261.5 1600 71.7
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2259.6 1554 74.4
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2256.5 1603 70.9
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2253.4 1595 72.2
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2249.6 1600 71.2
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2241.1 1589 70.8
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2241.1 1893 62.6
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2237.2 1584 71.2
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2236.5 1595 71.5
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2232.6 1601 70.3
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2219.5 1613 70.0
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2216.8 1633 69.6
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2214.9 1421 77.1
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2214.5 1596 69.7
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2213.3 1587 69.6
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2207.6 1503 73.5
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2205.3 1624 69.1
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2201.8 1606 70.4
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2197.9 1616 69.2
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2197.2 1636 68.9
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2193.7 1610 69.3
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2186.0 1629 68.7
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2164.8 1401 75.7
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2163.7 1597 68.8
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2153.6 1597 68.7
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2150.2 1600 69.0
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2139.8 1600 68.4
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2135.1 1605 68.3
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2134.4 1605 68.3
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2117.8 1600 67.1
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2115.9 1604 67.5
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2114.3 1604 66.8
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2107.0 1604 67.1
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2105.1 1608 68.1
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2103.9 1600 67.6
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2099.3 1600 67.5
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2078.5 1406 75.0
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2050.4 1595 66.4
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2042.3 1348 75.7
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2038.5 1614 65.2
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2035.8 1935 56.7
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2021.1 1460 69.8
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1994.2 1589 64.2
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1982.6 1581 64.6
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1974.5 1412 74.2
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1969.9 1619 63.3
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1933.7 1614 62.0
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1931.8 1611 63.0
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1913.7 970 99.4
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1909.8 1195 79.1
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1807.3 969 93.7
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1786.9 1583 61.0
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1757.7 1218 74.2
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1669.8 1099 75.7
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1584.7 1360 62.9
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1415.6 1618 47.9
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1408.7 1206 59.0
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1358.2 1616 46.8
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1343.9 1585 46.8
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1251.5 1079 60.6
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1212.2 643 97.0
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1212.2 1598 47.1
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1140.9 721 78.1
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.6e-284 983.8 633 76.6
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.0e-280 969.1 600 83.5
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.2e-278 963.4 589 84.6
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.6e-252 875.9 501 89.2
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 6.1e-236 822.4 581 71.1
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.1e-234 818.1 602 69.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 8.8e-227 792.0 649 63.5
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 7.7e-223 778.9 531 73.4
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 4.4e-202 709.9 522 68.8
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 8.0e-196 689.1 497 72.8
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 3.9e-190 670.2 553 64.7
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 2.9e-185 654.1 638 54.2
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.3e-172 612.1 513 63.4
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 2.8e-172 610.9 494 63.0
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 8.4e-161 572.8 459 64.5
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 3.1e-155 554.3 413 69.5
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 2.0e-154 551.6 337 79.2
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-153 548.5 324 88.0
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.4e-147 528.9 487 55.6
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 9.0e-147 526.2 360 74.7
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.9e-141 508.4 320 82.2
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 1.9e-141 508.4 325 77.2
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.0e-138 498.4 316 82.6
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 6.3e-124 450.3 291 79.7
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.2e-114 419.5 387 56.1
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.2e-112 411.0 402 54.2
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 8.0e-111 406.8 246 78.5
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.1e-107 394.4 361 57.3
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 4.1e-91 341.3 250 66.0
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 6.0e-74 284.3 211 67.3
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 8.4e-68 263.8 161 83.9
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 3.2e-59 235.3 142 76.1
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 3.5e-58 231.9 158 74.7
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 2.3e-57 229.2 142 77.5
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 4.2e-51 208.4 146 68.5
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.3e-49 203.4 212 53.3
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.6e-45 187.6 139 67.6
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 4.9e-44 184.9 115 79.1
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.1e-42 179.5 92 100.0
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.1e-40 173.7 129 68.2
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-34 153.3 143 57.3
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.1e-34 152.9 143 57.3
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.1e-34 152.9 143 57.3
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.1e-34 152.9 143 57.3
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.1e-34 152.9 143 57.3
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.1e-34 152.9 143 57.3
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.7e-34 152.5 143 56.6
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 3.9e-33 148.7 143 55.9
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.1e-30 140.6 102 75.5
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-26 126.7 130 53.1
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.7e-26 125.9 130 53.1
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 7.9e-26 124.4 99 65.7
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.3e-25 123.6 84 69.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.8e-25 123.2 91 67.0
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.2e-23 116.3 108 52.8
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 3.7e-23 115.5 108 51.9
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.1e-22 114.0 91 65.9
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.4e-22 113.6 107 58.9
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 9.7e-16 90.9 56 66.1
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.2e-15 87.8 82 56.1
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 1.8e-14 86.7 56 73.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.2e-13 84.0 51 70.6
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.7e-07 63.5 41 73.2
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 2.2e-07 63.2 44 63.6


User provided reference genes

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