Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g013630 Solanum pennellii HOM05D005353 ORTHO05D006248 7.2e-74 280.4 135 100.0
Solyc05g016380.4 Solanum lycopersicum HOM05D005353 ORTHO05D006248 1.7e-70 269.2 135 96.3
PGSC0003DMG400037053 Solanum tuberosum HOM05D005353 ORTHO05D006248 1.5e-63 246.1 135 89.6
Nitab4.5_0000019g0100 Nicotiana tabacum HOM05D005353 ORTHO05D006248 2.5e-58 228.8 136 83.1
Nitab4.5_0007722g0010 Nicotiana tabacum HOM05D005353 ORTHO05D006248 3.3e-58 228.4 135 82.2
Peaxi162Scf00322g00917 Petunia axillaris HOM05D005353 ORTHO05D006248 1.0e-56 223.4 136 80.1
CAN.G1337.25 Capsicum annuum HOM05D005353 ORTHO05D006248 4.0e-56 221.5 138 81.9
CAN.G357.8 Capsicum annuum HOM05D005353 ORTHO05D006248 1.2e-49 199.9 126 80.2
Peaxi162Scf01347g00135 Petunia axillaris HOM05D005353 ORTHO05D006248 1.2e-49 199.9 136 71.3
Solyc07g042930.3 Solanum lycopersicum HOM05D005353 ORTHO05D006248 1.3e-46 189.9 136 70.6
Sopen07g022530 Solanum pennellii HOM05D005353 ORTHO05D006248 1.4e-45 186.4 136 69.1
Dinv29491 Davidia involucrata HOM05D005353 ORTHO05D006248 3.2e-45 185.3 138 68.8
PGSC0003DMG401013561 Solanum tuberosum HOM05D005353 ORTHO05D006248 1.6e-44 183.0 135 68.1
Thecc.08G167300 Theobroma cacao HOM05D005353 ORTHO05D006248 8.1e-41 170.6 135 61.5
GSVIVG01017718001 Vitis vinifera HOM05D005353 ORTHO05D006248 1.1e-40 170.2 136 61.8
Ciclev10021112m.g Citrus clementina HOM05D005353 ORTHO05D006248 6.8e-40 167.5 134 62.7
Atru.chr4.3195 Acer truncatum HOM05D005353 ORTHO05D006248 1.5e-39 166.4 132 63.6
CiPaw.02G068200 Carya illinoinensis HOM05D005353 ORTHO05D006248 3.4e-39 165.2 138 60.9
MBI18_g03863_MAGBIO Magnolia biondii HOM05D005353 ORTHO05D006248 9.9e-39 163.7 138 59.4
Actinidia39944 Actinidia chinensis HOM05D005353 ORTHO05D006248 1.7e-38 162.9 137 62.0
Cc04_g14300 Coffea canephora HOM05D005353 ORTHO05D006248 1.7e-38 162.9 137 60.6
Lalb_Chr12g0200451 Lupinus albus HOM05D005353 ORTHO05D006248 6.4e-38 161.0 138 60.9
vmacro15495 Vaccinium macrocarpon HOM05D005353 ORTHO05D006248 1.9e-37 159.5 134 61.2
Oeu002498.1 Olea europaea HOM05D005353 ORTHO05D006248 5.4e-37 157.9 137 61.3
Manes.12G155100 Manihot esculenta HOM05D005353 ORTHO05D006248 7.1e-37 157.5 138 58.7
TWI73G0458 Tripterygium wilfordii HOM05D005353 ORTHO05D006248 2.7e-36 155.6 136 58.8
DCAR_023424 Daucus carota HOM05D005353 ORTHO05D006248 3.5e-36 155.2 141 58.2
Duzib116G0935 Durio zibethinus HOM05D005353 ORTHO05D006248 6.0e-36 154.5 135 56.3
Hma1.2p1_1067F.1_g253910 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 7.8e-36 154.1 136 57.4
Potri.010G004600 Populus trichocarpa HOM05D005353 ORTHO05D006248 7.8e-36 154.1 136 59.6
Sc10g0003710 Simmondsia chinensis HOM05D005353 ORTHO05D006248 3.0e-35 152.1 139 56.8
Gohir.D08G248600 Gossypium hirsutum HOM05D005353 ORTHO05D006248 5.1e-35 151.4 136 58.1
Medtr4g123573 Medicago truncatula HOM05D005353 ORTHO05D006248 8.6e-35 150.6 143 56.6
arahy.Tifrunner.gnm1.ann1.ETFP64 Arachis hypogaea HOM05D005353 ORTHO05D006248 1.1e-34 150.2 141 53.9
Gohir.A08G228300 Gossypium hirsutum HOM05D005353 ORTHO05D006248 1.5e-34 149.8 136 57.4
THA.LOC104821816 Tarenaya hassleriana HOM05D005353 ORTHO05D006248 1.9e-34 149.4 139 54.7
CSS0044252 Camellia sinensis var. sinensis HOM05D005353 ORTHO05D006248 2.5e-34 149.1 134 58.2
Lj6A705T54 Lonicera japonica HOM05D005353 ORTHO05D006248 2.5e-34 149.1 139 59.0
Sabra10G0004000 Salix brachista HOM05D005353 ORTHO05D006248 2.5e-34 149.1 136 56.6
QL06p014836 Quercus lobata HOM05D005353 ORTHO05D006248 4.3e-34 148.3 141 53.9
EL10Ac1g01664 Beta vulgaris HOM05D005353 ORTHO05D006248 5.6e-34 147.9 137 58.4
Gorai.004G265200 Gossypium raimondii HOM05D005353 ORTHO05D006248 1.6e-33 146.4 136 56.6
arahy.Tifrunner.gnm1.ann1.XSBG43 Arachis hypogaea HOM05D005353 ORTHO05D006248 2.1e-33 146.0 141 52.5
Lj2g0027327 Lotus japonicus HOM05D005353 ORTHO05D006248 2.8e-33 145.6 139 57.6
Rhsim02G0049500 Rhododendron simsii HOM05D005353 ORTHO05D006248 3.6e-33 145.2 135 55.6
Haze_00741 Corylus avellana HOM05D005353 ORTHO05D006248 4.7e-33 144.8 137 54.7
HanXRQChr05g0148921 Helianthus annuus HOM05D005353 ORTHO05D006248 4.7e-33 144.8 139 55.4
MSTRG.14933 Avicennia marina HOM05D005353 ORTHO05D006248 8.1e-33 144.1 136 53.7
Ca_21356_v3 Cicer arietinum L. HOM05D005353 ORTHO05D006248 8.1e-33 144.1 152 55.3
Cfa015762 Carpinus fangiana HOM05D005353 ORTHO05D006248 1.1e-32 143.7 137 54.7
ECA246G2061 Erigeron canadensis HOM05D005353 ORTHO05D006248 1.1e-32 143.7 137 55.5
PGR004G1856 Punica granatum HOM05D005353 ORTHO05D006248 1.1e-32 143.7 133 53.4
Psat4g020440 Pisum sativum HOM05D005353 ORTHO05D006248 1.4e-32 143.3 142 56.3
Prupe.1G209100 Prunus persica HOM05D005353 ORTHO05D006248 1.8e-32 142.9 140 52.9
PSO761G0146 Papaver somniferum HOM05D005353 ORTHO05D006248 2.4e-32 142.5 148 54.7
FAN07G1699 Fragaria x ananassa HOM05D005353 ORTHO05D006248 3.1e-32 142.1 141 50.4
Aa31LG8G4490 Aethionema arabicum HOM05D005353 ORTHO05D006248 4.0e-32 141.7 137 54.0
FvH4_4g21840 Fragaria vesca HOM05D005353 ORTHO05D006248 5.2e-32 141.4 141 50.4
CAN.G1337.26 Capsicum annuum HOM05D005353 ORTHO05D006248 6.9e-32 141.0 138 60.9
AUR62034345 Chenopodium quinoa HOM05D005353 ORTHO05D006248 6.9e-32 141.0 132 54.5
FAN12G4199 Fragaria x ananassa HOM05D005353 ORTHO05D006248 1.2e-31 140.2 141 50.4
BcaB04g20833 Brassica carinata HOM05D005353 ORTHO05D006248 1.5e-31 139.8 140 52.1
AT3G17611 Arabidopsis thaliana HOM05D005353 ORTHO05D006248 2.6e-31 139.0 138 52.2
CANSAT78G1361 Cannabis sativa HOM05D005353 ORTHO05D006248 2.6e-31 139.0 148 56.1
CARHR092930 Cardamine hirsuta HOM05D005353 ORTHO05D006248 4.4e-31 138.3 138 51.4
AUR62022362 Chenopodium quinoa HOM05D005353 ORTHO05D006248 4.4e-31 138.3 133 54.1
BcaC09g48719 Brassica carinata HOM05D005353 ORTHO05D006248 5.8e-31 137.9 140 50.7
Thhalv10021096m.g Eutrema salsugineum HOM05D005353 ORTHO05D006248 5.8e-31 137.9 138 50.7
FAN17G0053 Fragaria x ananassa HOM05D005353 ORTHO05D006248 5.8e-31 137.9 141 49.6
AL3G30690 Arabidopsis lyrata HOM05D005353 ORTHO05D006248 7.6e-31 137.5 138 51.4
Carub.0003s1733 Capsella rubella HOM05D005353 ORTHO05D006248 9.9e-31 137.1 138 52.2
Glyma.17G043300 Glycine max HOM05D005353 ORTHO05D006248 9.9e-31 137.1 134 54.5
C01p46630 Brassica napus HOM05D005353 ORTHO05D006248 1.7e-30 136.3 140 50.0
COL.COLO4_25111 Corchorus olitorius HOM05D005353 ORTHO05D006248 1.7e-30 136.3 133 54.1
RcHm_v2.0_Chr4g0428081 Rosa chinensis HOM05D005353 ORTHO05D006248 1.7e-30 136.3 141 47.5
MD13G1136300 Malus domestica HOM05D005353 ORTHO05D006248 3.8e-30 135.2 140 50.0
Hund17553 Selenicereus undatus HOM05D005353 ORTHO05D006248 3.8e-30 135.2 139 56.1
A01p36730 Brassica napus HOM05D005353 ORTHO05D006248 4.9e-30 134.8 140 50.0
BolC1t04628H Brassica oleracea HOM05D005353 ORTHO05D006248 4.9e-30 134.8 139 50.4
Glyma.13G116600 Glycine max HOM05D005353 ORTHO05D006248 4.9e-30 134.8 134 53.0
BcaC05g28769 Brassica carinata HOM05D005353 ORTHO05D006248 6.4e-30 134.4 140 50.0
C05p48760 Brassica napus HOM05D005353 ORTHO05D006248 6.4e-30 134.4 139 50.4
BolC5t33612H Brassica oleracea HOM05D005353 ORTHO05D006248 6.4e-30 134.4 139 50.4
Eucgr.H04153 Eucalyptus grandis HOM05D005353 ORTHO05D006248 6.4e-30 134.4 138 53.6
VMungo1215G2294 Vigna mungo HOM05D005353 ORTHO05D006248 1.1e-29 133.7 135 53.3
BraA01t03734Z Brassica rapa HOM05D005353 ORTHO05D006248 1.4e-29 133.3 139 50.4
Sp3g15750 Schrenkiella parvula HOM05D005353 ORTHO05D006248 1.4e-29 133.3 138 50.0
ClCG04G002200 Citrullus lanatus HOM05D005353 ORTHO05D006248 1.9e-29 132.9 139 56.1
TPR.G12683 Trifolium pratense HOM05D005353 ORTHO05D006248 2.4e-29 132.5 144 56.2
MELO3C008914.2 Cucumis melo HOM05D005353 ORTHO05D006248 1.6e-28 129.8 135 52.6
Cpa.g.sc146.5 Carica papaya HOM05D005353 ORTHO05D006248 4.6e-28 128.3 136 49.3
Phvul.003G125100 Phaseolus vulgaris HOM05D005353 ORTHO05D006248 4.6e-28 128.3 135 51.1
SGA_v2.0_scaffold73G24528 Striga asiatica HOM05D005353 ORTHO05D006248 6.0e-28 127.9 135 51.1
SalBow7G1146 Salvia bowleyana HOM05D005353 ORTHO05D006248 1.0e-27 127.1 136 50.0
CsaV3_4G030510 Cucumis sativus L. HOM05D005353 ORTHO05D006248 1.7e-27 126.3 135 52.6
BraA05t22052Z Brassica rapa HOM05D005353 ORTHO05D006248 3.0e-27 125.6 139 48.9
Sed0018181 Sechium edule HOM05D005353 ORTHO05D006248 1.5e-26 123.2 140 48.6
Cfa015759 Carpinus fangiana HOM05D005353 ORTHO05D006248 5.6e-26 121.3 138 51.4
Migut.M00009 Erythranthe guttata HOM05D005353 ORTHO05D006248 5.6e-26 121.3 142 47.2
A05p32220 Brassica napus HOM05D005353 ORTHO05D006248 1.3e-25 120.2 138 48.6
Aqoxy2G00444 Aquilegia oxysepala HOM05D005353 ORTHO05D006248 2.8e-25 119.0 135 51.1
Zm00001eb332500 Zea mays HOM05D005353 ORTHO05D006248 2.8e-25 119.0 143 45.5
Os01g0283500 Oryza sativa ssp. japonica HOM05D005353 ORTHO05D006248 6.2e-25 117.9 141 44.7
BcaB06g25831 Brassica carinata HOM05D005353 ORTHO05D006248 1.8e-24 116.3 124 50.0
Haze_00742 Corylus avellana HOM05D005353 ORTHO05D006248 6.9e-24 114.4 137 48.2
Zm00001eb227080 Zea mays HOM05D005353 ORTHO05D006248 6.9e-24 114.4 144 43.1
ATR0796G336 Amborella trichopoda HOM05D005353 ORTHO05D006248 3.4e-23 112.1 141 45.4
HPP92_012759 Vanilla planifolia HOM05D005353 ORTHO05D006248 4.5e-23 111.7 137 45.3
Lsat_1_v5_gn_0_37861 Lactuca sativa HOM05D005353 ORTHO05D006248 3.8e-22 108.6 135 47.4
SEGI_40739 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 4.9e-22 108.2 153 45.1
SHI11368 Sapria himalayana HOM05D005353 ORTHO05D006248 1.6e-20 103.2 132 44.7
CDE02G2900 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 3.3e-18 95.5 137 44.5
Pp3c15_4650 Physcomitrium patens HOM05D005353 ORTHO05D006248 8.1e-17 90.9 149 39.6
Nn4g25269 Nelumbo nucifera HOM05D005353 ORTHO05D006248 5.3e-16 88.2 73 60.3
Pp3c9_8740 Physcomitrium patens HOM05D005353 ORTHO05D006248 1.2e-15 87.0 161 37.3
Lsat_1_v5_gn_6_61961 Lactuca sativa HOM05D005353 ORTHO05D006248 9.6e-10 67.4 95 42.1
Mapoly0061s0084 Marchantia polymorpha HOM05D005353 ORTHO05D006248 6.2e-09 64.7 147 29.3


User provided reference genes

Program Settings