Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 6.4e-106 387.5 204 100.0
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 5.2e-100 367.9 204 93.6
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 2.6e-91 339.0 211 87.2
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.7e-66 256.5 212 68.4
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.7e-63 246.5 210 65.2
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 8.4e-58 227.6 224 59.4
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 5.7e-46 188.3 159 67.9
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 3.0e-31 139.4 220 42.3
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 2.8e-29 132.9 206 42.7
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 4.5e-27 125.6 221 39.4
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 1.3e-26 124.0 150 45.3
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 1.7e-26 123.6 217 37.3
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 2.2e-26 123.2 208 39.4
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 1.4e-25 120.6 209 39.2
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 5.5e-25 118.6 172 41.3
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 5.5e-25 118.6 212 38.2
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 7.2e-25 118.2 199 37.2
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 3.6e-24 115.9 225 39.1
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.7e-24 115.5 215 34.4
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.0e-23 114.4 199 38.7
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.3e-23 113.2 209 36.8
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.0e-23 112.8 217 34.6
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.0e-23 112.8 217 36.4
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 8.8e-23 111.3 212 35.8
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 2.6e-22 109.8 184 35.9
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 1.7e-21 107.1 171 41.5
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 2.2e-21 106.7 206 37.9
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 4.8e-21 105.5 203 38.4
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 4.8e-21 105.5 208 35.1
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 6.3e-21 105.1 200 36.0
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 6.3e-21 105.1 165 37.0
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 6.3e-21 105.1 201 34.8
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 8.2e-21 104.8 116 49.1
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 1.1e-20 104.4 180 35.6
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 1.1e-20 104.4 195 35.9
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.4e-20 104.0 116 45.7
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.4e-20 104.0 116 45.7
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 3.1e-20 102.8 182 38.5
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 3.1e-20 102.8 198 34.8
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 3.1e-20 102.8 167 38.9
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 5.3e-20 102.1 113 49.6
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 5.3e-20 102.1 213 37.1
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 9.1e-20 101.3 210 36.7
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 9.1e-20 101.3 205 36.6
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 1.2e-19 100.9 211 37.9
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.2e-19 100.9 153 37.9
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 1.6e-19 100.5 141 40.4
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.6e-19 99.8 210 34.8
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 3.5e-19 99.4 156 41.0
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 4.5e-19 99.0 207 35.3
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 4.5e-19 99.0 201 34.3
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 7.7e-19 98.2 204 31.9
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 1.3e-18 97.4 135 39.3
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 3.8e-18 95.9 215 32.1
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 6.5e-18 95.1 174 38.5
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 1.9e-17 93.6 171 36.8
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 2.5e-17 93.2 220 31.8
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 7.2e-17 91.7 167 38.3
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 9.4e-17 91.3 218 36.2
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 2.1e-16 90.1 237 33.8
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 2.1e-16 90.1 207 35.3
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 2.7e-16 89.7 135 39.3
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 8.0e-16 88.2 196 34.2
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 8.0e-16 88.2 154 37.0
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 1.8e-15 87.0 204 35.8
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.8e-15 87.0 219 34.7
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 3.0e-15 86.3 218 31.2
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 3.0e-15 86.3 185 34.6
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 4.0e-15 85.9 208 32.7
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.2e-15 85.5 202 34.2
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.7e-15 85.1 203 32.0
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 6.7e-15 85.1 213 34.3
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 8.8e-15 84.7 201 33.3
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 8.8e-15 84.7 202 36.1
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 8.8e-15 84.7 198 31.8
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.2e-14 84.3 174 36.8
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 2.6e-14 83.2 137 37.2
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 3.3e-14 82.8 128 39.1
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 4.4e-14 82.4 125 41.6
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 4.4e-14 82.4 202 35.1
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 9.7e-14 81.3 102 43.1
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 1.3e-13 80.9 196 32.1
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 2.8e-13 79.7 213 31.5
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 4.8e-13 79.0 89 47.2
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 1.1e-12 77.8 245 29.0
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 1.1e-12 77.8 142 37.3
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 1.4e-12 77.4 196 31.6
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 2.4e-12 76.6 140 37.9
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 3.1e-12 76.3 163 34.4
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.1e-12 75.9 97 44.3
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 5.3e-12 75.5 150 36.0
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 1.2e-11 74.3 104 44.2
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 1.6e-11 73.9 159 32.7
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 1.6e-11 73.9 159 32.7
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 2.0e-11 73.6 200 29.0
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 2.0e-11 73.6 155 34.8
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 2.0e-11 73.6 155 34.8
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 2.7e-11 73.2 198 32.3
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 5.9e-11 72.0 101 38.6
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 7.7e-11 71.6 64 54.7
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 1.0e-10 71.2 159 33.3
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.3e-10 70.9 97 44.3
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 1.3e-10 70.9 217 30.4
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 3.8e-10 69.3 162 30.9
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 3.8e-10 69.3 175 30.3
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 6.5e-10 68.6 195 30.8
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 1.1e-09 67.8 159 30.8
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 1.5e-09 67.4 170 31.8
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.2e-08 64.3 126 34.1
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 1.6e-08 63.9 208 28.8
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 2.0e-06 57.0 204 27.9


User provided reference genes

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