Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1692.2 835 100.0
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1685.2 835 99.4
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1553.9 835 91.0
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1387.1 838 80.7
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1379.4 838 80.1
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1377.1 838 80.5
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1371.3 836 79.8
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1367.8 843 79.6
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1364.4 838 80.0
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1362.1 838 79.6
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1360.9 838 79.7
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1359.7 838 79.4
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1358.6 838 80.1
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1356.3 838 79.4
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1354.3 844 79.6
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1354.0 837 79.0
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1354.0 838 79.0
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1352.0 838 79.4
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1350.5 838 78.6
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1349.3 838 79.0
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1348.2 827 80.4
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1345.1 831 79.4
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1341.6 868 78.1
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1340.9 838 78.3
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1337.8 838 77.6
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1335.5 837 78.0
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1333.2 838 78.4
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 858 77.9
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1330.9 835 80.8
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 838 78.0
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1328.9 858 76.8
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 838 77.4
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1318.9 838 77.3
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1318.9 836 77.9
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1315.8 840 77.6
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 839 77.6
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1313.9 839 76.8
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 911 72.8
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 840 77.4
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1312.4 839 77.5
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1312.4 915 72.7
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 838 77.1
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 838 77.1
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1310.8 840 77.0
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1310.4 838 76.7
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 839 77.1
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1308.9 838 76.8
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 838 76.8
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1303.1 838 77.2
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1302.7 838 76.7
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1301.2 838 77.3
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1300.8 967 69.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1297.7 841 76.0
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 870 74.8
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 867 74.2
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1293.5 838 75.5
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1293.5 838 76.5
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1293.1 838 75.7
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1288.1 838 75.4
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1287.7 837 76.2
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1286.2 839 76.2
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1283.9 838 74.8
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1278.8 843 74.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1278.5 827 76.5
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1276.5 839 74.9
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 839 74.7
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1273.1 838 74.6
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1271.1 838 74.5
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1270.8 838 74.6
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1269.6 839 74.4
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1268.4 838 74.3
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1268.4 838 74.7
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1268.1 840 74.8
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1267.3 838 74.6
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1266.1 904 71.0
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1261.9 911 70.6
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1258.4 845 73.5
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1257.3 845 73.5
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1257.3 838 75.5
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1255.7 848 73.7
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1253.8 845 73.3
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1245.0 764 79.1
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1233.8 765 78.6
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1228.4 838 73.5
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 0.0e+00 1227.2 651 93.1
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1224.2 781 76.2
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1218.0 843 72.6
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1213.4 751 80.2
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1201.4 824 73.1
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1194.5 838 71.4
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1192.2 775 76.3
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1184.9 843 71.5
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1174.5 839 69.4
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1174.1 765 75.2
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1169.1 858 67.7
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1164.8 839 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1162.1 823 70.0
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1157.1 794 72.2
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1146.7 842 72.4
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1118.2 844 66.5
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1107.0 748 71.7
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1090.5 697 76.5
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1087.4 693 77.3
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1085.9 839 66.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1077.8 852 63.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.8e-306 1054.7 839 64.0
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 4.9e-306 1054.3 849 63.1
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.9e-294 1015.8 510 97.5
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 7.5e-246 854.4 642 68.1
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 5.4e-228 795.0 542 71.0
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 6.4e-205 718.4 418 83.3
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 9.7e-153 545.0 329 81.5
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-118 431.8 300 75.0
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.3e-108 397.1 254 78.0
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 7.3e-108 396.0 285 67.7
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.1e-100 372.1 307 59.6
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.7e-93 348.2 196 85.2
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 9.9e-89 332.4 263 63.9
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 8.7e-85 319.3 389 48.3
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 4.0e-74 283.9 182 80.2
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-65 255.8 275 53.5
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.1e-52 212.6 139 76.3
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.9e-47 195.3 140 68.6
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 3.0e-45 188.0 117 79.5
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 7.7e-33 146.7 93 75.3
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 4.2e-31 141.0 83 79.5
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 8.8e-29 133.3 82 80.5
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.4e-28 131.3 100 65.0
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 5.4e-26 124.0 76 76.3
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.2e-25 122.9 176 41.5
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 8.9e-21 106.7 84 63.1
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.6e-20 105.1 73 72.6
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.8e-18 99.0 67 73.1
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 3.3e-15 88.2 68 66.2
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 2.8e-14 85.1 106 51.9
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 1.0e-08 66.6 41 80.5
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 8.6e-08 63.5 50 62.0
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.1e-07 63.2 42 78.6


User provided reference genes

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