Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 1.3e-105 386.3 194 100.0
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 1.5e-101 372.9 189 98.4
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 1.3e-79 300.1 195 80.5
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 2.2e-76 289.3 195 76.9
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 5.9e-61 238.0 200 66.0
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 2.5e-59 232.6 201 61.7
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 4.7e-58 228.4 194 60.3
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 2.6e-56 222.6 190 61.1
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 2.2e-55 219.5 203 59.1
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 4.9e-55 218.4 189 61.9
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 8.3e-55 217.6 190 58.4
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 1.8e-54 216.5 199 60.3
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 4.1e-54 215.3 196 57.7
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 9.2e-54 214.2 194 60.8
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 2.0e-53 213.0 186 59.7
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 3.5e-53 212.2 187 61.5
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 4.5e-53 211.8 196 57.1
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 1.0e-52 210.7 190 57.9
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 1.3e-52 210.3 196 57.1
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 1.3e-52 210.3 202 55.9
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 5.0e-52 208.4 195 58.5
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 6.6e-52 208.0 231 52.8
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 6.6e-52 208.0 202 54.5
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 1.1e-51 207.2 195 56.9
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 1.5e-51 206.8 174 59.2
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 1.5e-51 206.8 183 59.6
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 1.5e-51 206.8 196 58.7
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 4.3e-51 205.3 190 57.9
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 5.6e-51 204.9 187 57.8
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 5.6e-51 204.9 215 54.4
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 9.5e-51 204.1 178 60.7
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.6e-50 203.4 202 55.0
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 1.6e-50 203.4 195 56.9
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 2.8e-50 202.6 197 58.9
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 2.8e-50 202.6 193 57.5
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 2.8e-50 202.6 178 58.4
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 3.6e-50 202.2 184 58.2
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 8.0e-50 201.1 196 55.6
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 8.0e-50 201.1 174 60.3
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 1.4e-49 200.3 192 58.9
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 1.4e-49 200.3 198 56.1
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 1.8e-49 199.9 192 57.8
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 2.3e-49 199.5 185 56.8
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 2.3e-49 199.5 228 48.7
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 3.0e-49 199.1 196 55.1
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 5.2e-49 198.4 202 54.0
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 6.8e-49 198.0 196 54.6
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 6.8e-49 198.0 194 57.2
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 6.8e-49 198.0 141 67.4
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 8.9e-49 197.6 194 54.1
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 1.2e-48 197.2 195 53.8
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 1.5e-48 196.8 194 53.6
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 1.7e-47 193.4 200 55.0
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 1.1e-46 190.7 193 55.4
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 1.1e-46 190.7 188 55.3
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 1.8e-46 189.9 196 51.5
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 5.4e-46 188.3 192 55.2
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 1.2e-45 187.2 190 51.1
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 1.6e-45 186.8 190 55.3
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 2.0e-45 186.4 192 55.7
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 2.7e-45 186.0 159 59.7
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 4.6e-45 185.3 173 57.2
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 4.6e-45 185.3 189 52.4
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 1.5e-43 180.3 159 58.5
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 1.9e-43 179.9 203 50.2
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 2.5e-43 179.5 162 56.2
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 2.5e-43 179.5 194 52.1
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 3.3e-43 179.1 210 49.0
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 1.6e-42 176.8 178 55.1
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 2.1e-42 176.4 182 54.4
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 2.8e-42 176.0 151 60.3
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 3.6e-42 175.6 231 46.3
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 1.5e-40 170.2 196 50.5
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 7.5e-40 167.9 156 53.2
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 1.3e-39 167.2 183 51.4
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 3.7e-39 165.6 187 51.9
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 3.7e-39 165.6 90 90.0
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 4.9e-39 165.2 187 51.9
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 2.4e-38 162.9 179 50.8
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 1.2e-37 160.6 187 50.8
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 4.6e-37 158.7 104 78.8
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 4.6e-37 158.7 104 78.8
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 6.0e-37 158.3 192 49.5
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 7.8e-37 157.9 173 52.6
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 7.8e-37 157.9 160 52.5
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 1.1e-35 154.1 173 52.0
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.9e-35 153.3 105 68.6
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.9e-35 153.3 112 65.2
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 4.7e-34 148.7 157 50.3
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 5.2e-33 145.2 118 61.9
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 9.8e-32 141.0 152 51.3
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 4.1e-30 135.6 91 74.7
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 5.1e-28 128.6 111 57.7
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 1.1e-27 127.5 110 59.1
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 1.8e-25 120.2 144 48.6
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 5.2e-25 118.6 81 72.8
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 5.2e-25 118.6 81 72.8
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 1.4e-22 110.5 208 39.9
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 1.9e-22 110.2 104 57.7
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.2e-21 107.5 97 54.6
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 1.3e-20 104.0 76 64.5
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 2.3e-20 103.2 132 42.4
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.1e-19 100.9 111 52.3
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 1.5e-19 100.5 72 65.3
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 2.5e-19 99.8 104 53.8
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 3.6e-18 95.9 107 54.2
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 3.6e-18 95.9 130 35.4
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 4.7e-18 95.5 190 35.3
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 4.7e-18 95.5 114 37.7
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 1.4e-17 94.0 57 73.7
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 6.9e-17 91.7 105 35.2
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 2.6e-16 89.7 72 61.1
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 1.1e-14 84.3 52 75.0
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 2.7e-13 79.7 94 45.7
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 4.3e-11 72.4 139 30.2
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 2.1e-10 70.1 52 65.4
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 3.6e-10 69.3 51 64.7
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 4.8e-10 68.9 52 63.5
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 1.5e-08 63.9 54 59.3


User provided reference genes

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