Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 4.7e-112 407.9 209 100.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 4.7e-112 407.9 209 100.0
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.5e-110 402.9 209 98.1
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.5e-110 402.9 209 98.6
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 5.2e-103 377.9 209 92.3
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.0e-102 375.9 209 91.4
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.6e-102 375.6 209 91.4
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 3.3e-102 375.2 207 91.3
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 3.3e-102 375.2 207 91.3
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.4e-102 374.8 209 91.4
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 7.4e-102 374.0 207 91.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 7.4e-102 374.0 209 90.9
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 9.7e-102 373.6 209 90.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.3e-101 373.2 207 91.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 1.7e-101 372.9 209 90.4
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-101 372.9 209 90.9
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.7e-101 372.9 209 90.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.7e-101 372.9 209 90.4
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.8e-101 372.1 213 89.7
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 2.8e-101 372.1 209 90.4
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 3.7e-101 371.7 209 90.0
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 3.7e-101 371.7 209 90.0
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 3.7e-101 371.7 207 89.9
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 89.5
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 90.0
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 90.0
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 6.3e-101 370.9 209 90.9
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 6.3e-101 370.9 209 90.0
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.1e-100 370.2 209 90.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.1e-100 370.2 209 89.0
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 90.3
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 209 89.5
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 209 89.5
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.4e-100 369.0 207 89.4
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.4e-100 369.0 209 89.5
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 4.1e-100 368.2 209 89.5
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 4.1e-100 368.2 209 89.5
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 4.1e-100 368.2 209 90.0
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 5.3e-100 367.9 209 88.5
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.0e-100 367.5 209 88.5
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 7.0e-100 367.5 209 90.0
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 9.1e-100 367.1 209 88.5
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.5
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.2e-99 366.7 209 88.0
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.6e-99 366.3 209 89.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.6e-99 366.3 207 88.4
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-99 366.3 209 88.0
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.6e-99 366.3 209 88.5
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.6e-99 366.3 214 88.8
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.0e-99 365.9 209 88.5
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.0e-99 365.9 209 88.0
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 2.0e-99 365.9 209 90.0
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 3.5e-99 365.2 209 87.1
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 3.5e-99 365.2 209 88.0
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 4.5e-99 364.8 209 88.0
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.5e-99 364.8 209 87.6
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 5.9e-99 364.4 209 88.0
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 7.7e-99 364.0 207 88.4
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 7.7e-99 364.0 207 88.9
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 7.7e-99 364.0 209 87.1
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 87.5
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.0e-98 363.6 207 88.4
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.3e-98 363.2 207 87.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.3e-98 363.2 207 87.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.7e-98 362.8 207 87.4
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 2.2e-98 362.5 209 87.6
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 5.0e-98 361.3 209 87.1
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 5.0e-98 361.3 209 86.6
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 5.0e-98 361.3 219 85.4
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 8.5e-98 360.5 207 87.0
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.1e-97 360.1 209 88.0
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 2.5e-97 359.0 209 87.1
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 3.2e-97 358.6 209 87.6
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 3.2e-97 358.6 209 86.6
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.2e-97 358.6 209 88.5
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 87.5
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 87.5
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.2e-96 356.7 209 87.1
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.6e-96 356.3 204 86.8
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 87.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 87.0
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 2.7e-96 355.5 204 86.8
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 6.1e-96 354.4 209 86.1
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 8.0e-96 354.0 208 86.5
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 8.0e-96 354.0 208 86.5
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 84.6
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 3.0e-95 352.1 196 90.8
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 87.0
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 4.0e-95 351.7 208 87.0
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 8.8e-95 350.5 208 86.5
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.5e-94 349.7 209 82.8
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 3.3e-94 348.6 208 85.6
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.4e-94 348.2 209 82.3
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 7.5e-94 347.4 207 85.5
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.2e-93 345.9 209 86.1
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 3.7e-93 345.1 209 83.3
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.3e-92 341.3 209 84.7
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 7.0e-92 340.9 208 84.1
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 7.0e-92 340.9 208 84.1
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-91 339.0 208 83.7
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.2e-90 335.9 208 84.1
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.5e-89 332.4 208 81.7
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.1e-88 327.8 209 82.8
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.3e-87 325.9 180 90.6
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 8.8e-87 323.9 179 91.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 4.8e-85 318.2 178 89.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.1e-84 317.0 190 83.2
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.8e-84 316.2 204 79.4
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.1e-84 313.9 203 74.9
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 3.5e-83 312.0 178 88.2
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 4.5e-83 311.6 177 88.1
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 8.6e-82 307.4 204 78.4
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.5e-81 306.6 180 83.9
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 2.8e-80 302.4 209 78.0
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.4e-76 290.0 204 73.0
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 4.1e-76 288.5 167 84.4
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.5e-75 285.4 207 72.0
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 4.5e-75 285.0 157 91.1
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.5e-73 279.3 157 89.2
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.1e-71 272.3 235 66.0
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 8.3e-69 264.2 202 63.9
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.2e-68 262.3 209 69.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 4.6e-67 258.5 204 60.8
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.3e-66 256.1 201 60.7
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 4.3e-65 251.9 199 61.8
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 3.7e-61 238.8 163 78.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 5.1e-58 228.4 200 56.5
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.3e-55 219.5 121 90.1
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.5e-54 216.9 133 84.2
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.4e-52 209.5 201 52.7
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 7.8e-51 204.5 149 71.8
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.0e-50 204.1 208 52.9
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.3e-50 203.0 152 72.4
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.1e-47 194.1 198 47.0
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 2.4e-47 193.0 208 55.8
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.9e-45 186.0 196 45.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 6.0e-43 178.3 234 43.6
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.3e-42 177.2 161 64.0
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.3e-41 172.2 98 85.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 9.9e-38 161.0 209 50.2
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 7.3e-33 144.8 203 46.3
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-31 140.6 100 76.0
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 9.9e-30 134.4 97 77.3
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 6.4e-29 131.7 187 38.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.9e-28 130.2 74 86.5
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.0e-26 124.4 83 74.7
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.3e-26 124.0 93 72.0
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.0e-26 122.9 132 55.3
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.8e-24 116.3 61 90.2
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.8e-23 113.6 73 80.8
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 7.6e-22 108.2 60 86.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.7e-21 107.1 83 68.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 7.1e-12 75.1 62 62.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 2.3e-10 70.1 61 67.2
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.2e-08 63.5 39 71.8
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 2.4e-07 60.1 69 56.5
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 9.0e-07 58.2 157 25.5
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.0e-06 57.0 38 65.8


User provided reference genes

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