Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 0.0e+00 1166.8 826 100.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 0.0e+00 1126.7 826 96.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.2e-230 803.9 864 73.4
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 7.3e-201 704.9 849 64.1
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 7.8e-195 684.9 847 57.0
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.5e-113 414.8 879 36.2
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.5e-97 361.7 211 88.2
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 3.3e-92 344.0 936 30.4
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.4e-89 334.0 854 32.0
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 4.4e-89 333.6 869 33.7
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.4e-87 328.6 866 34.4
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.6e-86 325.1 856 30.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.0e-86 324.7 852 31.3
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 3.5e-86 323.9 860 32.4
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 6.0e-86 323.2 887 31.0
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 8.6e-85 319.3 863 32.6
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.3e-84 316.2 870 32.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.1e-83 314.7 834 31.9
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.2e-83 313.2 832 31.4
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.3e-82 311.2 856 31.0
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.0e-81 308.1 848 30.9
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 4.9e-80 303.5 837 31.3
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 5.4e-79 300.1 851 29.6
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 9.2e-79 299.3 855 29.8
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 9.2e-79 299.3 855 30.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.6e-78 298.5 945 27.9
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.3e-77 294.7 857 30.7
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 3.0e-77 294.3 419 45.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 4.3e-76 290.4 839 32.3
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.3e-76 290.4 878 30.0
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.3e-76 290.4 860 30.3
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 7.3e-76 289.7 857 30.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 7.3e-76 289.7 839 30.2
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 9.5e-76 289.3 856 28.7
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.6e-75 288.5 799 30.8
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.6e-75 288.5 419 45.8
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.6e-75 288.5 836 35.2
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.8e-75 287.7 419 45.8
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 3.6e-75 287.3 887 30.2
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 4.7e-75 287.0 871 32.7
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 6.2e-75 286.6 832 29.3
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 8.1e-75 286.2 873 29.2
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.4e-74 285.4 859 32.2
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.4e-74 285.4 861 28.8
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 4.0e-74 283.9 861 31.6
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 6.8e-74 283.1 844 31.5
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.2e-73 282.3 876 29.2
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.5e-73 282.0 418 44.5
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 3.4e-73 280.8 860 30.6
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.3e-72 278.9 443 42.2
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.3e-72 278.9 842 30.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 8.3e-72 276.2 848 33.0
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.9e-71 275.0 886 30.2
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.4e-71 274.6 852 29.7
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.4e-71 274.6 865 30.4
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.1e-71 273.1 865 30.3
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 7.1e-71 273.1 839 30.6
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.2e-70 272.3 447 43.0
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.1e-70 271.6 833 31.1
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.1e-70 271.6 856 29.2
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 6.0e-70 270.0 841 29.7
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.0e-69 269.2 859 39.5
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.7e-69 268.5 884 29.8
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.1e-69 266.9 781 31.5
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 6.6e-69 266.5 882 29.4
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 8.6e-69 266.2 840 31.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 8.6e-69 266.2 840 31.8
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 8.6e-69 266.2 881 28.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.1e-68 265.8 864 28.5
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.9e-68 265.0 877 29.4
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.5e-68 264.6 834 34.2
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 5.6e-68 263.5 838 32.6
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.8e-67 261.2 1051 27.1
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 4.7e-67 260.4 832 33.8
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 6.2e-67 260.0 912 28.4
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 6.2e-67 260.0 899 28.5
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.4e-66 258.1 865 30.4
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 2.4e-66 258.1 831 39.2
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 3.1e-66 257.7 852 35.8
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 8.9e-66 256.1 865 29.2
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 8.9e-66 256.1 858 30.2
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.4e-65 254.2 839 32.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 5.8e-65 253.4 833 29.7
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.9e-64 251.1 454 41.0
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.9e-63 248.4 851 32.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 3.2e-63 247.7 819 32.2
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.1e-62 245.0 866 33.3
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.0e-61 241.1 858 28.6
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.0e-61 241.1 837 30.0
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 3.9e-61 240.7 845 29.7
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.7e-61 239.6 838 28.2
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 8.7e-61 239.6 859 28.1
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.9e-60 238.4 831 30.1
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.5e-60 238.0 857 30.3
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 6.9e-58 229.9 869 29.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.6e-57 226.5 835 27.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 7.6e-57 226.5 879 29.2
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.2e-56 224.9 833 28.9
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.2e-55 221.1 753 31.9
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.1e-54 218.4 855 29.0
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.7e-54 218.0 947 26.0
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.3e-53 215.7 828 27.9
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.7e-53 215.3 846 28.3
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 3.9e-53 214.2 771 29.3
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.3e-52 211.1 893 25.6
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 6.2e-51 206.8 896 26.1
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-50 204.1 846 27.3
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 6.9e-50 203.4 780 29.6
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 2.0e-49 201.8 887 25.3
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-48 199.1 829 26.4
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 5.4e-47 193.7 781 28.7
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 9.3e-47 193.0 866 26.0
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.2e-46 192.6 591 32.5
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.7e-46 191.4 880 25.7
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 5.6e-44 183.7 836 25.4
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 5.6e-44 183.7 841 26.5
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 2.8e-43 181.4 576 30.2
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.0e-41 175.3 852 26.9
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.9e-40 171.4 836 25.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 6.0e-38 163.7 711 28.6
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 7.9e-38 163.3 839 26.6
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.5e-36 159.1 193 50.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 4.3e-36 157.5 848 26.4
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.1e-34 152.9 815 23.9
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 5.3e-34 150.6 352 34.1
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 5.8e-33 147.1 112 72.3
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.9e-29 134.4 434 27.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.9e-28 132.1 469 28.8
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.3e-27 129.4 226 37.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.4e-25 121.3 817 22.4
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 5.9e-25 120.6 138 44.2
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 2.2e-24 118.6 184 38.6
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.8e-24 117.9 810 22.2
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 3.8e-24 117.9 197 41.1
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 5.0e-24 117.5 803 26.2
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.2e-23 114.8 460 25.9
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.4e-21 109.4 808 21.2
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.7e-21 107.1 881 21.5
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.5e-20 105.9 109 50.5
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.3e-20 104.8 137 42.3
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 2.2e-16 92.0 88 50.0
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.5e-15 87.4 84 48.8
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 7.2e-15 87.0 300 28.0
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.1e-14 85.5 422 29.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 2.1e-14 85.5 422 29.6
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 7.9e-14 83.6 120 42.5
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.8e-13 82.4 198 31.8
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 2.3e-13 82.0 391 36.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.0e-13 81.6 65 60.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.0e-13 81.6 90 43.3
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 3.9e-13 81.3 430 28.6
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 2.0e-12 79.0 118 43.2
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.3e-12 78.2 133 42.1
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.4e-12 77.8 87 48.3
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 9.7e-12 76.6 84 42.9
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 2.8e-11 75.1 61 54.1
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.3e-11 73.9 88 43.2
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.1e-10 73.2 201 32.3
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.4e-10 72.8 88 43.2
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 4.1e-10 71.2 87 41.4
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 7.7e-09 67.0 736 20.1
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 1.7e-08 65.9 227 24.7
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 2.9e-08 65.1 82 43.9
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 6.5e-08 63.9 99 38.4
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.1e-07 63.2 83 47.0
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 1.2e-06 59.7 147 32.7


User provided reference genes

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