Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 2.9e-167 592.0 350 100.0
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.4e-161 573.2 350 97.7
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 5.7e-155 551.2 350 95.4
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.0e-113 411.4 332 80.7
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.0e-112 408.3 353 77.3
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.4e-105 385.2 343 75.2
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 3.3e-94 349.4 361 67.0
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 8.1e-93 344.7 335 71.0
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.8e-92 343.6 278 82.7
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.4e-92 343.2 344 68.3
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.4e-92 343.2 339 70.5
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.1e-92 342.8 355 67.9
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 4.0e-92 342.4 358 67.6
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.0e-92 342.4 366 65.0
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 5.3e-92 342.0 356 67.4
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-91 340.5 355 67.3
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 3.4e-91 339.3 349 67.6
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 7.6e-91 338.2 343 68.8
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 4.2e-89 332.4 345 68.7
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.2e-89 332.4 349 65.6
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.2e-88 330.9 342 69.0
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.2e-88 330.9 374 61.8
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.2e-88 330.9 336 68.8
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.7e-88 329.7 334 68.3
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.7e-88 329.7 336 68.2
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 6.0e-88 328.6 339 69.3
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 6.0e-88 328.6 336 68.8
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.0e-87 327.8 338 68.9
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.3e-87 326.6 348 66.1
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.3e-87 326.6 348 66.1
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.0e-87 326.2 344 67.2
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 3.9e-87 325.9 336 67.9
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 4.3e-86 322.4 336 66.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 4.3e-86 322.4 337 66.8
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 7.3e-86 321.6 355 58.9
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 7.3e-86 321.6 345 66.1
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.3e-85 320.9 337 67.1
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.6e-85 320.5 337 66.2
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.1e-85 320.1 340 65.0
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 4.8e-85 318.9 345 67.2
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 6.2e-85 318.5 341 65.1
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 2.4e-84 316.6 336 65.8
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.1e-84 316.2 357 63.9
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 4.0e-84 315.8 320 70.3
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.6e-83 313.2 302 71.5
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 7.6e-83 311.6 343 65.3
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.3e-82 310.8 281 75.1
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 2.9e-82 309.7 341 64.5
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 6.4e-82 308.5 354 63.0
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.4e-81 306.6 342 63.7
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.4e-81 306.6 368 61.7
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 3.2e-81 306.2 307 68.4
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.2e-81 306.2 375 61.6
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.2e-81 305.8 345 62.9
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 5.4e-81 305.4 281 74.7
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 9.3e-81 304.7 343 63.0
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 9.3e-81 304.7 336 65.5
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.1e-80 303.5 323 51.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.5e-80 302.8 336 65.2
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.5e-80 302.8 349 61.9
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.0e-79 301.2 304 69.4
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.8e-79 300.4 346 63.3
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.8e-79 300.4 346 62.1
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.0e-79 299.7 336 64.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 5.1e-79 298.9 344 62.2
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 6.7e-79 298.5 343 62.4
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 8.7e-79 298.1 189 80.4
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.3e-78 296.2 345 62.0
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.3e-78 296.2 340 63.5
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 2.1e-77 293.5 338 65.4
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.8e-77 293.1 347 60.8
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.7e-77 292.7 336 63.7
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 4.8e-77 292.4 280 72.5
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 6.2e-77 292.0 346 61.6
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.1e-76 291.2 350 59.4
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 5.3e-76 288.9 347 57.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 9.0e-76 288.1 284 66.5
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 2.0e-75 287.0 350 60.6
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.0e-75 287.0 334 61.7
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 9.9e-75 284.6 335 61.8
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 4.9e-74 282.3 338 60.9
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.9e-73 280.4 341 60.7
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 7.1e-73 278.5 337 55.8
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 9.3e-73 278.1 326 62.9
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.6e-69 267.3 335 59.4
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.7e-69 266.2 236 61.4
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 9.0e-68 261.5 300 65.3
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.6e-67 260.0 293 57.0
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.3e-66 257.7 342 54.7
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.2e-66 256.9 340 59.7
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.5e-66 255.4 246 56.5
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 8.4e-66 255.0 340 57.9
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.2e-65 252.7 218 60.1
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 7.1e-65 251.9 335 57.0
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.2e-64 251.1 264 70.5
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.7e-64 250.0 220 57.7
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 3.5e-64 249.6 317 47.6
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 6.0e-64 248.8 279 64.9
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.8e-63 247.3 165 69.7
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 3.9e-63 246.1 278 66.5
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.5e-62 244.2 235 75.3
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.3e-62 243.0 338 56.5
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 9.7e-62 241.5 335 55.5
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.3e-61 241.1 311 61.7
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.6e-61 240.7 289 60.9
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.3e-60 235.7 369 37.7
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.9e-59 232.3 337 53.7
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.2e-57 225.3 337 53.1
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.2e-56 224.6 416 48.8
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.6e-56 224.2 165 66.1
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.8e-55 220.7 323 55.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.8e-53 213.4 244 71.7
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-51 208.0 335 51.3
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 4.7e-48 196.1 368 48.1
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.4e-47 194.5 272 58.8
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.0e-46 190.7 192 80.2
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 9.7e-46 188.3 192 80.2
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.4e-41 174.5 166 88.0
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.6e-38 163.7 213 41.8
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 2.8e-37 160.2 181 48.6
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 5.3e-36 156.0 175 48.0
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 7.0e-36 155.6 288 50.3
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.9e-34 150.2 278 51.1
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.6e-30 137.1 117 55.6
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.7e-29 133.3 172 42.4
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-27 127.9 171 41.5
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.0e-27 127.5 171 42.1
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-23 114.0 142 81.7
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.0e-22 110.9 85 58.8
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 3.1e-20 103.6 107 46.7
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 7.7e-19 99.0 146 41.1
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.8e-18 96.7 128 83.6
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.2e-16 91.7 114 47.4
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.2e-16 91.7 134 64.2
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.6e-16 90.1 81 55.6
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.3e-13 79.0 122 79.5
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.8e-07 61.2 54 53.7
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-07 60.8 40 65.0
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 3.1e-07 60.5 62 48.4
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 4.0e-07 60.1 40 72.5
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 5.2e-07 59.7 48 54.2
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 1.2e-06 58.5 48 66.7
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 3.4e-06 57.0 54 55.6
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 5.8e-06 56.2 60 46.7


User provided reference genes

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