Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 2.6e-156 555.4 301 100.0
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 4.1e-109 398.7 225 97.8
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.4e-88 330.5 314 65.9
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.8e-78 296.2 290 62.8
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.8e-78 296.2 293 60.4
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.1e-77 292.7 317 57.1
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.5e-74 283.1 294 58.2
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.3e-70 270.8 296 58.4
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 5.9e-68 261.9 311 53.1
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 2.3e-67 260.0 317 50.8
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 1.5e-66 257.3 319 51.4
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 1.4e-64 250.8 279 53.8
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 6.6e-51 205.3 224 53.6
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 4.3e-50 202.6 287 49.5
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 2.2e-46 190.3 214 51.4
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.0e-43 179.9 324 41.0
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 2.5e-42 176.8 324 38.9
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 4.7e-41 172.6 323 38.4
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 6.0e-36 155.6 302 37.4
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 2.3e-35 153.7 322 37.9
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.3e-35 153.7 192 52.1
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.6e-33 147.5 148 56.1
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 3.1e-32 143.3 308 37.3
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.0e-31 140.6 171 50.3
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.6e-31 138.7 142 59.2
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 2.2e-30 137.1 314 37.9
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 2.4e-29 133.7 318 35.2
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 6.0e-28 129.0 314 36.3
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 5.1e-27 125.9 299 35.5
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 8.7e-27 125.2 315 35.9
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 1.1e-26 124.8 307 33.2
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 1.5e-26 124.4 302 36.4
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 2.5e-26 123.6 312 35.6
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.5e-26 123.6 309 35.0
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 2.5e-26 123.6 301 33.2
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 3.3e-26 123.2 319 36.4
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.3e-26 123.2 304 33.9
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 5.6e-26 122.5 312 34.9
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 5.6e-26 122.5 316 35.1
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 7.3e-26 122.1 314 34.4
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 9.6e-26 121.7 309 34.6
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.6e-26 121.7 316 35.1
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 1.3e-25 121.3 311 33.8
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.6e-25 120.9 290 35.5
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.6e-25 120.9 307 34.9
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 2.1e-25 120.6 323 32.8
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 2.8e-25 120.2 305 35.1
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 2.8e-25 120.2 305 35.1
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 4.8e-25 119.4 310 33.9
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.8e-25 119.4 307 35.2
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 6.2e-25 119.0 311 35.4
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 1.1e-24 118.2 308 34.4
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 1.4e-24 117.9 327 33.6
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 1.8e-24 117.5 302 33.4
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.4e-24 117.1 309 35.3
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 4.0e-24 116.3 312 34.3
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 4.0e-24 116.3 301 35.5
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 4.0e-24 116.3 224 38.4
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 9.0e-24 115.2 291 35.1
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 9.0e-24 115.2 305 33.4
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 1.2e-23 114.8 302 34.8
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.5e-23 114.4 130 50.8
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.6e-23 113.6 310 33.5
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 3.4e-23 113.2 304 33.2
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 3.4e-23 113.2 304 33.2
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 3.4e-23 113.2 304 33.2
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.7e-22 110.9 311 31.2
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.9e-22 110.2 281 34.5
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 2.9e-22 110.2 295 35.3
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 2.9e-22 110.2 307 31.3
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 2.9e-22 110.2 295 31.5
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 3.8e-22 109.8 306 34.0
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 6.4e-22 109.0 281 34.2
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 8.4e-22 108.6 298 36.6
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 1.1e-21 108.2 314 30.9
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.1e-21 108.2 269 32.7
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 1.4e-21 107.8 317 33.1
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 1.9e-21 107.5 325 32.6
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.4e-21 107.1 309 34.0
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 3.2e-21 106.7 328 32.0
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 5.4e-21 105.9 314 31.8
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 5.4e-21 105.9 259 33.2
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 7.1e-21 105.5 314 30.6
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 7.1e-21 105.5 323 31.0
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 9.3e-21 105.1 314 32.2
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 9.3e-21 105.1 300 33.7
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 9.3e-21 105.1 311 30.5
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 9.3e-21 105.1 309 33.0
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 1.2e-20 104.8 223 36.8
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.2e-20 104.8 324 31.2
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 1.6e-20 104.4 285 33.7
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 2.7e-20 103.6 319 30.7
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 2.7e-20 103.6 326 32.5
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 3.5e-20 103.2 300 32.3
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 1.3e-19 101.3 310 32.6
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 3.9e-19 99.8 300 31.0
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 5.1e-19 99.4 323 32.5
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 6.7e-19 99.0 314 32.5
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 1.1e-18 98.2 317 32.5
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 1.1e-18 98.2 233 39.1
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 1.5e-18 97.8 277 31.0
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 1.5e-18 97.8 327 31.5
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.9e-18 97.4 314 35.0
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 2.5e-18 97.1 305 34.4
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 3.3e-18 96.7 306 30.4
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 3.3e-18 96.7 318 32.7
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 5.6e-18 95.9 333 30.3
Nitab4.5_0004471g0140 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.4e-18 95.5 90 58.9
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 9.6e-18 95.1 277 32.9
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 1.3e-17 94.7 208 36.1
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 1.6e-17 94.4 286 35.0
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.6e-17 94.4 215 37.2
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.6e-17 94.4 263 34.6
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 4.8e-17 92.8 316 30.1
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 4.8e-17 92.8 298 29.5
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 2.4e-16 90.5 314 30.9
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 3.1e-16 90.1 304 30.6
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 6.9e-16 89.0 230 35.7
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.2e-15 88.2 324 30.6
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 1.2e-15 88.2 218 35.8
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 1.5e-15 87.8 296 29.1
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.5e-15 87.8 316 31.6
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 5.8e-15 85.9 334 28.4
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 5.8e-15 85.9 332 27.1
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.7e-14 84.3 228 34.6
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 2.9e-14 83.6 316 30.1
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 6.4e-14 82.4 332 29.8
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 1.1e-13 81.6 314 29.6
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.4e-13 81.3 310 29.4
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 1.9e-13 80.9 298 30.9
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.9e-13 80.9 310 29.0
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 1.6e-12 77.8 314 29.0
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.6e-12 77.8 157 35.0
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 3.5e-12 76.6 323 30.3
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 4.6e-12 76.3 192 36.5
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 6.0e-12 75.9 316 30.1
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 7.9e-12 75.5 295 30.2
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.8e-11 74.3 204 32.4
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 2.3e-11 73.9 321 27.1
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 2.3e-11 73.9 220 30.0
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 3.0e-11 73.6 232 32.3
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 3.0e-11 73.6 150 43.3
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 8.7e-11 72.0 316 28.5
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 2.5e-10 70.5 161 32.3
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 2.5e-10 70.5 291 31.6
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 3.3e-10 70.1 140 37.9
Nitab4.5_0008978g0020 Nicotiana tabacum HOM05D003448 ORTHO05D025922 2.8e-09 67.0 67 52.2
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 6.2e-09 65.9 137 35.0
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 6.2e-09 65.9 186 33.9
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 1.1e-08 65.1 296 30.1
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 1.8e-08 64.3 287 26.5
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 2.4e-08 63.9 313 28.4
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 4.0e-08 63.2 126 35.7
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 1.2e-07 61.6 134 40.3
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 1.2e-07 61.6 134 40.3
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 1.5e-07 61.2 218 30.3
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 2.6e-07 60.5 183 30.1
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 3.4e-07 60.1 289 29.4
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 5.8e-07 59.3 246 28.9
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 5.8e-07 59.3 218 27.1


User provided reference genes

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