Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 4.1e-168 594.7 320 100.0
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 6.4e-145 517.7 324 88.0
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 6.4e-137 491.1 325 86.2
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.0e-106 389.8 224 95.5
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.2e-88 329.3 332 59.3
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.4e-86 323.9 331 58.9
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.4e-85 318.9 326 57.4
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.2e-82 310.8 327 58.4
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.7e-82 308.1 313 59.7
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 2.8e-68 263.1 283 56.2
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 1.2e-66 257.7 317 50.8
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.7e-65 253.8 148 91.2
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 6.8e-62 241.9 312 50.0
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 9.5e-56 221.5 240 55.0
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 2.8e-55 219.9 297 47.5
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 1.6e-50 204.1 243 52.3
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.3e-46 190.3 199 58.8
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 1.1e-43 181.4 333 40.5
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 5.9e-42 175.6 332 39.8
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.6e-41 172.2 333 42.0
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.1e-38 164.9 327 37.3
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.6e-34 151.0 318 35.5
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 1.6e-34 151.0 300 37.7
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 1.6e-34 151.0 337 36.8
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 6.6e-33 145.6 315 35.9
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 1.1e-32 144.8 318 33.3
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.6e-31 141.0 157 54.8
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 4.7e-31 139.4 325 35.1
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 6.2e-31 139.0 328 34.8
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.3e-30 137.1 138 58.7
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 8.9e-30 135.2 323 35.6
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 4.4e-29 132.9 312 31.4
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 5.8e-29 132.5 317 32.8
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 5.8e-29 132.5 328 32.0
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 7.5e-29 132.1 322 35.1
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 9.9e-29 131.7 324 31.2
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.9e-29 131.7 146 53.4
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.7e-28 131.0 337 33.8
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 2.2e-28 130.6 303 32.0
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 3.7e-28 129.8 324 34.9
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 4.9e-28 129.4 308 34.1
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 4.9e-28 129.4 327 35.2
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 4.9e-28 129.4 330 36.4
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.1e-27 128.3 317 33.8
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 1.4e-27 127.9 323 32.8
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 1.4e-27 127.9 339 35.1
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.9e-27 127.5 314 34.4
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 1.9e-27 127.5 308 32.8
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 2.4e-27 127.1 327 33.3
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 4.1e-27 126.3 295 35.9
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.1e-27 126.3 330 32.7
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.2e-27 125.2 330 32.7
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.2e-26 124.8 312 33.0
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.2e-26 124.8 317 32.2
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 2.1e-26 124.0 348 33.9
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.1e-26 124.0 312 33.7
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 2.1e-26 124.0 320 32.2
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 2.1e-26 124.0 321 33.3
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.7e-26 123.6 288 34.0
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 3.5e-26 123.2 321 31.5
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.5e-26 123.2 315 34.9
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.5e-26 123.2 312 34.0
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 6.0e-26 122.5 325 34.2
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 1.0e-25 121.7 314 31.5
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.3e-25 121.3 336 33.0
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 1.3e-25 121.3 325 33.5
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 2.3e-25 120.6 330 32.4
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 2.3e-25 120.6 324 32.7
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 3.0e-25 120.2 342 31.9
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 5.1e-25 119.4 239 35.6
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 5.1e-25 119.4 328 35.1
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.1e-24 118.2 331 32.9
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.5e-24 117.9 297 35.7
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 1.5e-24 117.9 288 35.8
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 2.5e-24 117.1 354 31.4
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 2.5e-24 117.1 344 32.8
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.3e-24 116.7 297 35.4
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 4.3e-24 116.3 324 30.9
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.3e-24 116.3 322 32.3
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 5.6e-24 115.9 329 31.6
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 1.2e-23 114.8 314 34.1
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 1.2e-23 114.8 314 34.1
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 2.1e-23 114.0 309 32.0
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 2.8e-23 113.6 326 33.4
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 3.6e-23 113.2 324 31.8
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 4.7e-23 112.8 322 32.0
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 6.2e-23 112.5 338 33.4
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 6.2e-23 112.5 314 35.0
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 8.1e-23 112.1 333 32.7
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 1.4e-22 111.3 323 31.9
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 1.4e-22 111.3 323 31.9
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 3.1e-22 110.2 266 36.5
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 3.1e-22 110.2 232 37.9
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 4.0e-22 109.8 320 30.0
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 4.0e-22 109.8 322 31.7
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 6.8e-22 109.0 337 32.3
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 8.9e-22 108.6 329 33.1
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 8.9e-22 108.6 323 32.5
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 8.9e-22 108.6 323 32.5
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.5e-21 107.8 318 30.8
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.5e-21 107.8 306 32.0
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.6e-21 107.1 319 30.4
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 2.6e-21 107.1 336 31.2
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 3.4e-21 106.7 347 31.4
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 4.4e-21 106.3 333 32.7
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 1.3e-20 104.8 331 31.4
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 1.3e-20 104.8 243 37.4
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 2.2e-20 104.0 329 29.5
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 4.9e-20 102.8 319 30.1
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 8.4e-20 102.1 321 31.2
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 1.4e-19 101.3 336 31.5
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.9e-19 100.9 311 32.2
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 2.4e-19 100.5 346 27.5
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 4.1e-19 99.8 320 30.6
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 1.2e-18 98.2 313 29.1
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 1.6e-18 97.8 311 28.9
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.7e-18 97.1 310 31.0
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 3.5e-18 96.7 329 29.5
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.8e-18 95.5 310 30.3
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 2.3e-17 94.0 314 30.3
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 2.3e-17 94.0 286 30.8
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 5.1e-17 92.8 316 29.4
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 5.1e-17 92.8 301 30.9
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 1.5e-16 91.3 248 32.7
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.5e-16 91.3 219 36.5
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 1.9e-16 90.9 326 29.4
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 4.3e-16 89.7 323 31.9
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 2.8e-15 87.0 331 29.3
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 2.8e-15 87.0 290 31.4
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 3.6e-15 86.7 296 32.1
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 6.2e-15 85.9 317 30.9
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.1e-14 83.6 183 36.1
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 6.9e-14 82.4 323 29.4
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 6.9e-14 82.4 314 25.2
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.5e-13 81.3 227 32.6
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 2.6e-13 80.5 337 28.2
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 4.4e-13 79.7 199 33.7
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 7.6e-13 79.0 163 36.8
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 9.9e-13 78.6 218 32.6
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 1.7e-12 77.8 212 27.8
Nitab4.5_0004471g0140 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.2e-12 77.4 90 46.7
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 1.1e-11 75.1 325 27.4
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 4.2e-11 73.2 285 28.8
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 9.3e-11 72.0 326 26.7
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 9.3e-11 72.0 150 33.3
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 9.3e-11 72.0 303 29.0
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 2.1e-10 70.9 160 34.4
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.5e-10 70.1 319 26.0
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 3.5e-10 70.1 280 27.9
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.0e-09 68.6 308 25.0
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.3e-09 67.4 294 28.2
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 5.1e-09 66.2 298 28.5
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 8.7e-09 65.5 133 36.8
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.9e-08 64.3 184 29.3
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 1.9e-08 64.3 286 29.0
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 2.5e-08 63.9 191 31.9
Nitab4.5_0008978g0020 Nicotiana tabacum HOM05D003448 ORTHO05D025922 4.3e-08 63.2 76 50.0
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 1.6e-07 61.2 329 24.3
PGSC0003DMG400028337 Solanum tuberosum HOM05D003448 ORTHO05D004028 4.0e-06 56.6 82 43.9
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 6.9e-06 55.8 142 33.1
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 6.9e-06 55.8 142 33.1
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 6.9e-06 55.8 169 30.2
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 6.9e-06 55.8 280 26.1


User provided reference genes

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