Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 9.6e-173 610.1 324 100.0
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 1.5e-146 523.1 324 88.0
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.3e-132 476.9 325 82.8
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.6e-101 372.9 224 90.2
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.5e-88 330.5 328 58.5
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.1e-87 325.1 329 58.4
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.3e-84 317.4 323 56.7
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.7e-84 317.0 329 57.1
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.6e-81 305.1 313 57.8
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 2.0e-69 266.9 283 54.8
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.2e-68 263.5 148 95.9
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 1.1e-67 261.2 319 51.4
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.6e-61 240.0 321 49.5
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 1.3e-57 227.6 308 46.8
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.6e-55 220.7 240 55.4
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 4.9e-52 209.1 242 52.1
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.6e-47 193.0 197 58.9
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 3.1e-46 189.9 331 40.2
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 9.9e-45 184.9 330 40.0
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.4e-44 181.8 331 41.7
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 7.4e-40 168.7 325 36.6
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.9e-36 156.8 316 35.4
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 1.1e-35 154.8 328 35.4
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 1.9e-35 154.1 318 33.3
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 6.0e-34 149.1 291 35.4
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 1.0e-33 148.3 328 34.5
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 2.3e-33 147.1 333 34.5
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 6.7e-33 145.6 311 32.5
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 6.7e-33 145.6 163 55.2
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 1.1e-32 144.8 324 34.9
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 1.5e-32 144.4 333 36.0
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 2.5e-32 143.7 329 32.5
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 9.6e-32 141.7 315 34.0
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 3.7e-31 139.8 324 34.9
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.7e-31 139.8 314 34.1
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.4e-30 137.1 314 35.0
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.0e-30 135.2 138 56.5
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.0e-29 134.0 313 32.6
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.0e-29 134.0 318 35.5
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 3.4e-29 133.3 325 34.5
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 4.5e-29 132.9 331 32.6
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.5e-29 132.9 324 33.3
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 4.5e-29 132.9 326 32.8
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 1.0e-28 131.7 327 34.9
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.0e-28 131.7 324 33.3
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.3e-28 131.3 313 32.9
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 1.3e-28 131.3 331 31.7
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.2e-28 130.6 313 33.2
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 3.8e-28 129.8 326 32.8
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.4e-28 128.6 146 52.1
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 8.4e-28 128.6 326 33.1
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.1e-27 128.3 309 34.6
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.9e-27 127.5 328 33.5
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 1.9e-27 127.5 329 32.5
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 2.5e-27 127.1 326 33.4
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.5e-27 127.1 309 34.3
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 4.2e-27 126.3 321 32.4
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 5.5e-27 125.9 319 32.6
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 5.5e-27 125.9 335 34.3
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 7.1e-27 125.6 327 32.1
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 1.6e-26 124.4 323 32.5
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 3.5e-26 123.2 321 34.3
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 3.5e-26 123.2 286 34.3
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 4.6e-26 122.9 326 31.6
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 6.1e-26 122.5 329 33.1
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.3e-25 121.3 327 30.6
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 1.8e-25 120.9 305 31.8
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 8.7e-25 118.6 322 30.4
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 1.1e-24 118.2 337 31.2
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.1e-24 118.2 325 30.8
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 1.1e-24 118.2 229 37.1
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.5e-24 117.9 326 32.8
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 1.5e-24 117.9 309 34.0
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 1.5e-24 117.9 289 34.3
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 1.9e-24 117.5 253 34.8
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 2.5e-24 117.1 308 31.8
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 4.3e-24 116.3 329 31.3
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 4.3e-24 116.3 311 32.8
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 4.3e-24 116.3 311 32.8
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 4.3e-24 116.3 342 30.1
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 5.7e-24 115.9 310 34.8
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 7.4e-24 115.5 312 34.6
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 9.7e-24 115.2 336 28.3
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 1.3e-23 114.8 321 30.5
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.3e-23 114.8 327 33.6
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 2.2e-23 114.0 328 31.1
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 3.7e-23 113.2 326 29.1
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 3.7e-23 113.2 331 31.4
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 4.8e-23 112.8 317 30.3
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 4.8e-23 112.8 313 31.3
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 6.3e-23 112.5 325 31.1
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.1e-22 111.7 262 34.0
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.4e-22 111.3 305 31.5
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 1.8e-22 110.9 344 30.8
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 2.4e-22 110.5 321 31.2
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 2.4e-22 110.5 321 31.8
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 2.4e-22 110.5 317 31.5
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 2.4e-22 110.5 321 31.2
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 2.4e-22 110.5 321 31.8
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 2.4e-22 110.5 334 31.1
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 4.1e-22 109.8 309 31.1
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 1.2e-21 108.2 321 30.5
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 3.4e-21 106.7 332 30.7
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 3.4e-21 106.7 334 31.1
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 5.9e-21 105.9 328 31.7
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.3e-20 104.8 295 30.8
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 2.2e-20 104.0 318 29.9
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 2.9e-20 103.6 318 28.9
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 3.8e-20 103.2 310 31.9
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 6.5e-20 102.4 348 29.9
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 6.5e-20 102.4 330 29.4
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 8.5e-20 102.1 347 27.1
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 8.5e-20 102.1 244 36.9
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 3.2e-19 100.1 327 29.1
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 9.4e-19 98.6 335 29.6
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 1.2e-18 98.2 332 31.6
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 1.6e-18 97.8 295 31.2
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 2.1e-18 97.4 324 30.9
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.7e-18 97.1 314 29.3
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 1.8e-17 94.4 309 28.5
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.8e-17 94.4 234 34.6
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 3.0e-17 93.6 246 31.7
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 5.1e-17 92.8 295 31.2
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 5.1e-17 92.8 219 36.1
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.7e-17 92.4 307 28.3
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 8.8e-17 92.0 326 28.8
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 2.0e-16 90.9 293 28.3
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.0e-16 90.9 307 27.7
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 4.3e-16 89.7 289 29.4
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 9.7e-16 88.6 316 30.1
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.2e-15 87.4 183 35.0
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 2.8e-15 87.0 318 28.3
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 2.8e-15 87.0 309 28.2
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 8.2e-15 85.5 194 34.0
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 2.4e-14 84.0 184 35.3
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 1.2e-13 81.6 212 29.7
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 1.5e-13 81.3 335 27.5
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.0e-13 80.9 305 25.2
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 3.4e-13 80.1 161 36.0
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.4e-13 80.1 298 27.2
Nitab4.5_0004471g0140 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.5e-13 79.7 89 48.3
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 7.7e-13 79.0 214 28.0
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 4.2e-11 73.2 324 25.6
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 5.5e-11 72.8 156 33.3
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 7.2e-11 72.4 291 29.6
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 2.7e-10 70.5 165 33.9
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 2.7e-10 70.5 290 30.3
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 3.6e-10 70.1 299 27.4
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 1.0e-09 68.6 325 26.8
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 3.9e-09 66.6 186 31.7
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 3.9e-09 66.6 291 28.2
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 2.0e-08 64.3 332 24.7
Nitab4.5_0008978g0020 Nicotiana tabacum HOM05D003448 ORTHO05D025922 3.3e-08 63.5 113 37.2
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 3.3e-08 63.5 302 28.5
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 9.7e-08 62.0 236 30.5
PGSC0003DMG400028337 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.7e-07 60.1 86 43.0
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 4.8e-07 59.7 140 32.1
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 4.8e-07 59.7 140 32.1
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 8.2e-07 58.9 209 28.7
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.1e-06 56.6 273 24.9


User provided reference genes

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