Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 2.7e-124 448.7 237 100.0
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.1e-72 277.3 187 82.4
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.2e-66 257.3 236 59.3
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.7e-65 252.3 248 57.3
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.3e-65 251.5 223 62.3
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.6e-60 235.7 244 54.1
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.7e-60 235.3 222 56.8
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 1.7e-57 226.9 212 58.5
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.5e-55 219.2 244 51.6
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 5.5e-53 211.8 242 52.1
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 9.5e-53 211.1 243 52.3
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.6e-52 210.3 200 58.0
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.7e-49 199.1 223 52.9
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 4.1e-48 195.7 214 51.4
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 2.9e-46 189.5 220 50.0
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 7.8e-39 164.9 243 42.8
PGSC0003DMG400028337 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.3e-38 164.1 88 90.9
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.0e-38 162.9 239 43.5
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.1e-37 161.0 239 43.5
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.3e-37 158.3 141 57.4
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.8e-35 153.7 154 56.5
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 5.8e-34 148.7 239 41.0
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 9.2e-32 141.4 137 57.7
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 1.3e-30 137.5 244 41.0
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 3.9e-30 136.0 239 35.1
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 4.3e-29 132.5 244 40.2
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 1.6e-28 130.6 235 39.1
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 2.1e-28 130.2 243 36.6
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 1.4e-27 127.5 243 37.0
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.8e-27 127.1 246 39.0
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 6.8e-27 125.2 236 36.9
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.2e-26 124.4 243 35.0
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.5e-26 124.0 243 35.0
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 1.5e-26 124.0 241 37.3
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 2.6e-26 123.2 243 36.2
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 4.4e-26 122.5 240 32.9
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 4.4e-26 122.5 236 38.6
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 7.6e-26 121.7 236 33.9
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 1.3e-25 120.9 239 36.0
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 1.7e-25 120.6 240 34.2
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 2.2e-25 120.2 238 37.4
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 8.3e-25 118.2 250 37.2
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 8.3e-25 118.2 243 32.1
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 1.4e-24 117.5 248 35.9
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 1.4e-24 117.5 238 36.1
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 1.4e-24 117.5 238 36.1
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 5.4e-24 115.5 243 33.3
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 5.4e-24 115.5 243 36.2
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 7.1e-24 115.2 250 33.6
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 9.2e-24 114.8 243 33.3
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 1.2e-23 114.4 242 33.5
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 2.1e-23 113.6 249 34.9
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 2.7e-23 113.2 244 36.5
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 3.5e-23 112.8 227 40.1
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 3.5e-23 112.8 237 35.4
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 7.8e-23 111.7 241 36.1
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 7.8e-23 111.7 246 34.6
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 2.3e-22 110.2 239 33.1
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.3e-22 110.2 242 36.0
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 2.3e-22 110.2 241 34.0
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.0e-22 109.8 241 36.1
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 3.0e-22 109.8 239 35.1
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 3.9e-22 109.4 230 34.8
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 5.1e-22 109.0 241 34.9
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 8.6e-22 108.2 207 34.8
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 8.6e-22 108.2 239 33.9
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 2.5e-21 106.7 237 36.3
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 3.3e-21 106.3 240 35.4
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 5.6e-21 105.5 232 33.6
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 5.6e-21 105.5 219 33.8
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 1.6e-20 104.0 236 32.2
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 2.8e-20 103.2 223 36.3
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 4.7e-20 102.4 244 37.3
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 6.2e-20 102.1 240 33.8
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 6.2e-20 102.1 215 36.7
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 1.1e-19 101.3 241 33.6
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.1e-19 101.3 245 37.1
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.4e-19 100.9 243 32.1
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 3.1e-19 99.8 237 33.3
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 4.0e-19 99.4 228 33.3
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 4.0e-19 99.4 227 33.0
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 4.0e-19 99.4 228 33.3
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.0e-19 99.4 240 33.8
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 4.0e-19 99.4 204 35.3
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 5.2e-19 99.0 233 33.5
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.2e-18 97.8 175 40.6
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 1.2e-18 97.8 246 32.9
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 1.5e-18 97.4 239 31.4
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 2.0e-18 97.1 240 35.0
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 2.0e-18 97.1 239 33.5
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.6e-18 96.7 214 36.0
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.4e-18 96.3 243 32.1
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 3.4e-18 96.3 243 32.5
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 5.8e-18 95.5 147 39.5
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 7.6e-18 95.1 232 32.3
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 7.6e-18 95.1 244 31.6
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 1.3e-17 94.4 241 32.0
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.7e-17 94.0 239 32.6
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 1.7e-17 94.0 182 35.7
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.7e-17 94.0 248 35.5
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.2e-17 93.6 222 32.4
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.9e-17 93.2 231 32.9
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 2.9e-17 93.2 244 34.8
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 4.9e-17 92.4 232 31.9
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 4.9e-17 92.4 210 33.8
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 8.4e-17 91.7 236 33.1
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 8.4e-17 91.7 236 33.1
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 1.1e-16 91.3 236 30.9
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.1e-16 91.3 243 32.1
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 1.4e-16 90.9 249 33.7
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 1.4e-16 90.9 235 33.2
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.9e-16 90.5 222 32.0
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 2.4e-16 90.1 245 31.0
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 2.4e-16 90.1 142 37.3
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 2.4e-16 90.1 224 35.3
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 3.2e-16 89.7 236 31.8
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 5.4e-16 89.0 221 31.7
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 5.4e-16 89.0 217 32.7
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 5.4e-16 89.0 145 42.8
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 7.1e-16 88.6 241 31.1
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 1.2e-15 87.8 236 30.5
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.6e-15 87.4 238 29.8
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 2.7e-15 86.7 236 31.4
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 2.7e-15 86.7 244 32.0
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 3.5e-15 86.3 237 30.0
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 3.5e-15 86.3 239 31.0
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 6.0e-15 85.5 134 42.5
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.3e-14 83.6 234 33.8
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.9e-14 82.8 238 33.6
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 5.1e-14 82.4 229 35.8
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 8.7e-14 81.6 237 32.5
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 1.1e-13 81.3 237 30.4
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.1e-13 81.3 221 31.7
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 1.1e-13 81.3 227 32.2
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 1.9e-13 80.5 238 30.7
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 5.6e-13 79.0 216 30.6
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 2.1e-12 77.0 151 34.4
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 2.8e-12 76.6 241 29.5
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 8.1e-12 75.1 218 33.0
Sopen05g007630 Solanum pennellii HOM05D025680 ORTHO05D025922 1.1e-11 74.7 102 47.1
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 9.0e-11 71.6 163 35.0
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.0e-11 71.6 70 57.1
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 1.2e-10 71.2 153 39.9
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 1.2e-10 71.2 165 36.4
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 5.8e-10 68.9 218 33.5
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 9.9e-10 68.2 144 35.4
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.3e-09 67.8 61 60.7
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 2.2e-09 67.0 192 33.3
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.4e-08 64.3 219 29.7
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 1.4e-08 64.3 211 30.3
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.2e-08 62.8 122 36.9
Nitab4.5_0008978g0020 Nicotiana tabacum HOM05D003448 ORTHO05D025922 4.2e-08 62.8 79 48.1
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 7.1e-08 62.0 180 29.4
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 7.1e-08 62.0 135 33.3
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 7.1e-08 62.0 135 33.3
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 1.6e-07 60.8 163 31.9
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 2.7e-07 60.1 153 32.0
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.6e-07 59.3 231 28.1
MD12G1099700 Malus domestica HOM05D003448 ORTHO05D004028 6.0e-07 58.9 131 32.1
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 1.3e-06 57.8 247 30.0
PGSC0003DMG400000263 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.3e-06 57.8 120 33.3
unitig_699.g19913 Utricularia gibba HOM05D003448 ORTHO05D004028 2.3e-06 57.0 144 27.1
CiPaw.15G023500 Carya illinoinensis HOM05D001062 ORTHO05D000884 3.0e-06 56.6 219 26.0
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 3.9e-06 56.2 240 27.9
TPR.G34075 Trifolium pratense HOM05D003448 ORTHO05D004028 5.1e-06 55.8 127 32.3


User provided reference genes

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