Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.5e-146 522.7 404 100.0
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.9e-112 408.3 412 77.4
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.4e-56 224.6 409 57.0
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 1.5e-34 151.4 379 43.3
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.5e-29 134.8 238 41.2
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.0e-22 112.1 202 50.0
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.2e-17 94.4 92 54.3
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.9e-17 94.0 97 53.6
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.4e-16 91.7 105 52.4
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 3.2e-16 90.5 93 57.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.4e-16 89.7 93 50.5
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 7.1e-16 89.4 93 55.9
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 9.2e-16 89.0 93 54.8
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.1e-15 87.8 93 54.8
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 6.0e-15 86.3 80 56.2
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 7.8e-15 85.9 93 53.8
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.0e-14 85.5 87 55.2
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.3e-14 85.1 78 59.0
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.3e-14 85.1 85 55.3
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.7e-14 84.7 81 55.6
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.0e-14 84.0 85 52.9
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 3.0e-14 84.0 95 50.5
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 5.1e-14 83.2 93 52.7
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 8.7e-14 82.4 121 45.5
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.1e-13 82.0 86 54.7
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.5e-13 80.9 97 52.6
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.5e-13 80.9 97 52.6
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.3e-13 80.5 76 55.3
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 3.3e-13 80.5 81 51.9
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 5.6e-13 79.7 83 49.4
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 5.6e-13 79.7 94 51.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.6e-13 79.0 89 51.7
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.2e-12 78.6 86 46.5
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.6e-12 78.2 82 52.4
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 1.6e-12 78.2 90 50.0
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.1e-12 77.8 88 54.5
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 4.7e-12 76.6 86 53.5
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 4.7e-12 76.6 82 51.2
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 4.7e-12 76.6 87 51.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 6.2e-12 76.3 76 53.9
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 6.2e-12 76.3 76 55.3
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.1e-12 75.9 95 49.5
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.1e-11 75.5 79 53.2
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.4e-11 75.1 83 50.6
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.4e-11 75.1 108 42.6
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.4e-11 75.1 78 52.6
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.4e-11 75.1 83 50.6
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.8e-11 74.7 82 54.9
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.8e-11 74.7 84 51.2
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.8e-11 74.7 126 38.9
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.4e-11 74.3 91 51.6
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.1e-11 73.9 92 51.1
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.0e-11 73.6 88 46.6
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 4.0e-11 73.6 79 54.4
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 5.3e-11 73.2 89 47.2
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 5.3e-11 73.2 86 50.0
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 5.3e-11 73.2 102 45.1
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 5.3e-11 73.2 77 50.6
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 6.9e-11 72.8 95 46.3
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 6.9e-11 72.8 99 41.4
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 6.9e-11 72.8 81 54.3
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 9.0e-11 72.4 86 47.7
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 9.0e-11 72.4 86 47.7
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 9.0e-11 72.4 86 47.7
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 9.0e-11 72.4 86 47.7
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.2e-10 72.0 124 40.3
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.2e-10 72.0 87 51.7
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-10 72.0 86 47.7
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.2e-10 72.0 92 51.1
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.5e-10 71.6 73 52.1
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 1.5e-10 71.6 94 42.6
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.5e-10 71.6 98 46.9
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 2.0e-10 71.2 92 50.0
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.0e-10 71.2 82 54.9
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.6e-10 70.9 79 45.6
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.6e-10 70.9 90 52.2
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 2.6e-10 70.9 83 53.0
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.4e-10 70.5 83 49.4
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 3.4e-10 70.5 84 48.8
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 3.4e-10 70.5 84 48.8
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.4e-10 70.5 86 48.8
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 4.4e-10 70.1 113 41.6
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.4e-10 70.1 83 50.6
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.4e-10 70.1 99 46.5
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 4.4e-10 70.1 88 48.9
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 5.8e-10 69.7 68 58.8
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 7.6e-10 69.3 112 42.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 7.6e-10 69.3 90 46.7
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 7.6e-10 69.3 90 45.6
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 7.6e-10 69.3 89 46.1
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 9.9e-10 68.9 87 46.0
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 9.9e-10 68.9 106 41.5
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.3e-09 68.6 82 50.0
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.7e-09 68.2 79 53.2
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.7e-09 68.2 86 48.8
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-09 67.8 99 43.4
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-09 67.8 92 46.7
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.2e-09 67.8 71 53.5
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.9e-09 67.4 67 55.2
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.9e-09 67.4 75 52.0
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.8e-09 67.0 88 45.5
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 3.8e-09 67.0 91 48.4
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 3.8e-09 67.0 91 48.4
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 3.8e-09 67.0 80 48.8
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.8e-09 67.0 75 52.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.8e-09 67.0 81 46.9
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.8e-09 67.0 77 48.1
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 4.9e-09 66.6 74 48.6
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 4.9e-09 66.6 98 44.9
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 6.4e-09 66.2 113 40.7
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 6.4e-09 66.2 113 40.7
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 6.4e-09 66.2 120 39.2
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 6.4e-09 66.2 86 44.2
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 6.4e-09 66.2 74 51.4
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 6.4e-09 66.2 90 48.9
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 8.4e-09 65.9 95 47.4
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.9e-08 64.7 96 43.8
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.4e-08 64.3 79 46.8
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 3.2e-08 63.9 109 41.3
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 3.2e-08 63.9 78 48.7
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.2e-08 63.5 71 53.5
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 4.2e-08 63.5 100 42.0
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 4.2e-08 63.5 83 45.8
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 4.2e-08 63.5 83 45.8
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 4.2e-08 63.5 89 46.1
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 4.2e-08 63.5 68 54.4
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.2e-08 63.5 81 50.6
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.4e-08 63.2 83 43.4
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 5.4e-08 63.2 78 47.4
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 5.4e-08 63.2 87 42.5
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 7.1e-08 62.8 82 46.3
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.1e-08 62.8 72 45.8
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 9.3e-08 62.4 82 45.1
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 9.3e-08 62.4 79 45.6
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 9.3e-08 62.4 79 45.6
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.6e-07 61.6 82 46.3
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.6e-07 61.6 77 49.4
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.6e-07 61.6 78 47.4
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.6e-07 61.6 95 42.1
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.6e-07 61.6 98 40.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 2.1e-07 61.2 95 44.2
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.1e-07 61.2 81 48.1
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.7e-07 60.8 88 45.5
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.7e-07 60.8 78 47.4
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.7e-07 60.8 79 46.8
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 2.7e-07 60.8 93 37.6
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 2.7e-07 60.8 90 44.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.5e-07 60.5 82 43.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 4.6e-07 60.1 82 43.9
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 4.6e-07 60.1 82 43.9
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.6e-07 60.1 76 48.7
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 6.0e-07 59.7 73 49.3
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 7.8e-07 59.3 109 36.7
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.0e-06 58.9 63 54.0
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.3e-06 58.5 74 51.4
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 3.9e-06 57.0 77 45.5
Pp3c24_11300 Physcomitrium patens HOM05D030757 ORTHO05D004171 5.1e-06 56.6 121 38.8
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.1e-06 56.6 81 44.4
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 8.7e-06 55.8 73 46.6
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 8.7e-06 55.8 75 42.7


User provided reference genes

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