Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 0.0e+00 1229.5 618 100.0
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 0.0e+00 1209.9 618 98.1
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 0.0e+00 1110.1 619 88.9
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 0.0e+00 1079.7 666 81.8
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.1e-310 1069.3 625 84.0
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 6.3e-282 973.8 734 69.2
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 7.8e-240 833.9 618 66.0
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.7e-239 832.8 620 65.6
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 8.0e-237 823.9 617 65.0
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 4.1e-233 811.6 622 64.5
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.2e-232 810.1 616 65.1
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.7e-231 806.2 617 64.2
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.7e-231 806.2 626 64.2
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.1e-230 803.5 623 64.2
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.1e-230 803.5 618 65.7
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.2e-228 794.7 617 63.5
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 3.7e-226 788.5 621 63.6
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 6.4e-226 787.7 633 63.0
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 8.3e-226 787.3 622 63.7
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.9e-225 786.2 622 63.7
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.9e-225 786.2 633 63.0
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.2e-225 785.4 624 62.7
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.7e-224 782.3 624 63.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 6.0e-224 781.2 616 64.3
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 5.1e-223 778.1 621 62.6
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 6.6e-223 777.7 624 62.8
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 8.6e-223 777.3 617 62.7
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 3.3e-222 775.4 621 63.3
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.3e-222 775.4 632 61.6
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 4.3e-222 775.0 628 61.0
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 4.3e-222 775.0 655 59.8
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 7.3e-222 774.2 624 61.1
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.1e-221 772.7 623 62.8
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.1e-220 770.4 618 62.0
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 6.8e-220 767.7 622 62.4
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 7.6e-219 764.2 621 62.3
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.7e-218 763.1 637 59.8
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 3.8e-218 761.9 624 61.5
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 4.1e-217 758.4 617 61.1
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.2e-216 756.9 629 60.7
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 5.1e-215 751.5 625 59.2
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.5e-214 750.0 622 60.1
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 3.3e-214 748.8 575 65.2
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 7.3e-214 747.7 575 65.4
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 6.2e-213 744.6 622 60.0
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.4e-212 743.4 622 60.6
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 5.2e-212 741.5 621 60.7
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 5.2e-212 741.5 620 60.5
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.6e-211 739.2 617 60.3
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.7e-210 736.5 626 60.1
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.8e-210 735.3 665 57.1
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 8.4e-210 734.2 603 59.9
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 8.4e-210 734.2 621 59.6
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.1e-209 733.8 623 59.6
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.9e-209 733.0 620 59.8
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.9e-209 733.0 617 59.3
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.6e-208 729.9 597 60.8
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.7e-208 729.2 622 59.5
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 3.5e-208 728.8 601 59.7
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.0e-207 727.2 606 58.7
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 1.0e-207 727.2 624 59.8
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 1.3e-207 726.9 627 59.3
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 4.3e-206 721.8 731 53.2
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.3e-205 720.3 603 59.4
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 3.6e-205 718.8 618 58.9
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 4.8e-205 718.4 614 58.3
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 6.2e-205 718.0 619 58.3
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 6.2e-205 718.0 638 58.3
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 8.1e-205 717.6 621 59.7
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 8.1e-205 717.6 621 57.8
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 5.3e-204 714.9 621 59.6
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 2.0e-203 713.0 616 58.1
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.6e-203 712.6 632 57.9
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.8e-203 711.4 622 58.7
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.1e-201 707.2 629 58.3
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 7.9e-200 701.0 597 58.0
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.3e-199 700.3 597 58.0
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.9e-198 696.4 620 57.3
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 2.5e-198 696.0 614 57.2
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.3e-198 695.3 618 57.3
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.3e-197 693.7 625 58.1
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.6e-197 693.3 630 57.6
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 2.4e-196 689.5 600 57.3
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 2.0e-195 686.4 628 58.0
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 7.6e-195 684.5 628 57.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.2e-194 682.9 618 56.6
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 4.9e-194 681.8 618 56.8
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 4.6e-192 675.2 641 53.8
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.9e-191 672.2 629 55.8
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.4e-188 663.7 644 53.7
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.5e-187 660.2 628 55.6
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.9e-186 656.0 636 54.2
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 3.8e-186 655.6 625 54.4
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.2e-184 650.6 680 50.9
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 3.9e-183 645.6 326 98.8
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.2e-181 639.8 613 53.7
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 3.7e-181 639.0 624 53.7
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.8e-181 638.6 629 52.8
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 8.8e-175 617.8 607 53.7
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.9e-174 616.7 605 52.9
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 3.3e-174 615.9 605 52.4
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 4.3e-174 615.5 618 51.5
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 2.8e-173 612.8 514 60.5
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 7.7e-163 578.2 513 57.3
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.0e-159 567.8 629 48.6
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 3.0e-159 566.2 616 48.5
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.4e-151 540.8 656 48.2
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 4.9e-125 452.6 439 52.8
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-124 451.1 426 55.2
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.3e-122 444.5 336 61.9
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.7e-120 436.0 407 55.5
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-117 427.9 400 55.2
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.8e-115 418.7 407 53.6
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.1e-112 410.6 524 46.4
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.6e-112 409.8 426 51.4
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-109 401.0 426 50.2
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.9e-108 397.5 398 53.0
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.6e-107 392.9 416 51.2
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 8.6e-106 388.7 427 48.5
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-102 377.1 404 51.7
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.9e-98 363.2 451 44.1
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.9e-95 352.4 406 47.5
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 2.0e-86 324.3 570 35.1
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 7.6e-86 322.4 205 74.1
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 3.9e-82 310.1 479 36.5
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.0e-66 258.8 534 30.7
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.9e-66 256.9 550 30.7
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.7e-59 234.2 248 50.0
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 3.7e-56 223.8 251 49.8
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 2.0e-54 218.0 167 62.3
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 5.1e-50 203.4 566 26.3
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 8.8e-50 202.6 240 47.5
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.4e-47 195.3 260 44.6
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 5.9e-46 189.9 416 31.2
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.2e-36 157.5 135 57.8
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 9.8e-33 146.0 132 54.5
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 5.9e-30 136.7 108 62.0
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.0e-29 136.0 230 41.3
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.4e-28 129.4 121 56.2
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.6e-27 128.6 107 60.7
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 8.3e-24 116.3 89 60.7
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.1e-23 115.9 102 57.8
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.4e-23 113.6 97 56.7
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 2.9e-21 107.8 161 42.2
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 6.6e-21 106.7 93 58.1
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 1.2e-19 102.4 86 55.8
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.2e-18 97.1 80 57.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.1e-15 89.4 69 59.4
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.1e-15 89.4 69 59.4
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 5.9e-14 83.6 69 58.0
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-12 79.3 68 55.9
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-12 79.3 68 55.9
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.2e-11 75.9 48 70.8
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 3.7e-08 64.3 230 27.4
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.7e-08 64.3 55 50.9
Actinidia15078 Actinidia chinensis HOM05D000300 ORTHO05D008589 1.1e-07 62.8 230 30.0
Psat4g115000 Pisum sativum HOM05D000300 ORTHO05D008589 1.4e-07 62.4 230 30.0
SalBow6G5959 Salvia bowleyana HOM05D000300 ORTHO05D008589 1.4e-07 62.4 250 24.4
arahy.Tifrunner.gnm1.ann1.01S097 Arachis hypogaea HOM05D000300 ORTHO05D008589 1.9e-07 62.0 230 30.0
arahy.Tifrunner.gnm1.ann1.42J6NL Arachis hypogaea HOM05D000300 ORTHO05D008589 5.4e-07 60.5 230 29.6
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 9.2e-07 59.7 231 29.0
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 9.2e-07 59.7 230 26.5
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 2.0e-06 58.5 53 50.9
Ca_21414_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 2.0e-06 58.5 158 29.7
Nn1g07760 Nelumbo nucifera HOM05D000300 ORTHO05D008589 2.7e-06 58.2 230 28.3
Rhsim12G0112500 Rhododendron simsii HOM05D000300 ORTHO05D008589 2.7e-06 58.2 231 29.4
Manes.05G056400 Manihot esculenta HOM05D000300 ORTHO05D000383 6.0e-06 57.0 259 23.2
Phvul.003G063200 Phaseolus vulgaris HOM05D000300 ORTHO05D008589 6.0e-06 57.0 216 25.9
Cfa015551 Carpinus fangiana HOM05D000300 ORTHO05D008589 7.8e-06 56.6 230 28.3
Haze_00998 Corylus avellana HOM05D000300 ORTHO05D008589 7.8e-06 56.6 230 28.3


User provided reference genes

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