Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.2e-200 703.0 362 100.0
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 3.5e-184 648.3 363 93.4
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.3e-181 639.8 337 97.9
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.6e-168 595.1 344 90.7
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 1.3e-165 586.6 361 82.5
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.2e-165 585.9 335 91.6
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.0e-163 579.3 359 81.3
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 8.8e-159 563.9 358 78.8
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 8.8e-159 563.9 328 85.4
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 2.6e-158 562.4 362 79.8
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 8.2e-157 557.4 328 83.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 8.2e-157 557.4 358 78.8
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.2e-155 553.5 358 79.3
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.0e-154 550.4 356 77.8
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 3.8e-154 548.5 342 79.8
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 8.5e-154 547.4 332 82.5
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.9e-153 546.2 309 88.3
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.5e-153 545.8 355 77.5
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.5e-153 545.8 355 77.5
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-153 544.7 342 79.8
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-153 544.7 341 80.6
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 7.2e-153 544.3 349 78.5
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 9.4e-153 543.9 354 77.7
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-152 543.5 354 77.4
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.6e-152 543.1 328 82.6
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.6e-152 543.1 355 78.6
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.6e-152 543.1 347 78.7
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.7e-152 542.3 323 82.0
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 3.6e-152 542.0 355 77.2
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-151 540.0 342 78.7
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-151 539.3 380 72.9
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.3e-151 539.3 354 77.1
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.2e-151 538.1 327 81.7
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.2e-151 538.1 327 81.7
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.6e-150 535.8 354 76.3
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 2.6e-150 535.8 317 83.3
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 3.3e-150 535.4 332 80.1
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 4.4e-150 535.0 353 77.6
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 7.5e-150 534.3 316 83.2
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 9.7e-150 533.9 304 86.5
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.8e-149 532.3 347 78.7
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 3.7e-149 531.9 347 77.8
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.8e-149 531.6 323 80.2
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 8.2e-149 530.8 354 75.7
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.8e-148 529.6 323 79.6
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 3.1e-148 528.9 359 75.2
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 4.1e-148 528.5 359 75.8
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 7.0e-148 527.7 353 75.6
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 9.1e-148 527.3 352 76.7
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 9.1e-148 527.3 347 75.5
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 9.1e-148 527.3 353 76.5
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.6e-147 526.6 352 76.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.6e-147 526.6 354 76.0
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 2.0e-147 526.2 352 76.1
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 3.5e-147 525.4 352 76.1
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 4.5e-147 525.0 333 79.3
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.0e-146 523.9 355 74.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.0e-146 523.9 354 74.6
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.3e-146 523.5 357 76.8
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.7e-146 523.1 327 80.4
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.7e-146 523.1 335 77.6
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 2.9e-146 522.3 325 79.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 3.8e-146 521.9 351 74.9
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 3.8e-146 521.9 352 75.9
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 6.5e-146 521.2 352 75.6
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 8.5e-146 520.8 352 75.6
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 8.5e-146 520.8 352 75.6
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 8.5e-146 520.8 352 75.6
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 8.5e-146 520.8 355 74.1
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 8.5e-146 520.8 319 79.9
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.1e-145 520.4 356 75.3
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.5e-145 520.0 352 75.0
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.5e-145 519.2 329 78.1
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.2e-145 518.8 351 75.2
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 4.2e-145 518.5 354 74.0
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.2e-145 517.7 356 73.3
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 9.4e-145 517.3 352 75.3
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 9.4e-145 517.3 351 74.1
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 9.4e-145 517.3 306 82.7
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.2e-144 516.9 357 74.5
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.1e-144 516.2 334 76.3
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.7e-144 515.0 352 74.4
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.7e-144 515.0 352 74.4
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.7e-144 515.0 352 74.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 5.2e-143 511.5 357 73.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 6.8e-143 511.1 361 73.7
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 3.4e-142 508.8 357 72.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 6.3e-141 504.6 322 77.6
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 8.3e-141 504.2 359 72.4
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 8.3e-141 504.2 331 75.8
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 8.3e-141 504.2 324 77.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 9.1e-140 500.7 296 81.4
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.2e-139 500.4 291 84.2
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.5e-137 493.4 312 79.5
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.5e-137 493.4 341 72.4
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.5e-137 492.7 308 78.6
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.2e-135 485.0 341 71.6
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 5.7e-134 481.5 295 80.7
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 9.8e-134 480.7 324 76.2
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.7e-133 478.8 379 68.6
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.1e-132 477.2 369 69.9
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-132 476.5 311 76.5
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.1e-132 475.7 352 70.5
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 5.4e-132 474.9 301 80.4
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.4e-132 474.9 331 72.8
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-131 473.4 311 76.8
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.0e-130 470.7 367 70.0
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 6.6e-130 468.0 296 76.0
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.9e-129 466.5 243 100.0
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 7.3e-129 464.5 309 74.4
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 2.1e-128 463.0 405 64.2
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 5.2e-127 458.4 245 92.2
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.7e-126 454.9 341 66.0
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 9.8e-126 454.1 323 68.1
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 5.0e-122 441.8 329 66.6
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.1e-121 440.7 355 61.7
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 2.5e-121 439.5 265 81.5
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 2.1e-120 436.4 364 64.8
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 4.7e-120 435.3 322 70.8
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 6.2e-120 434.9 282 76.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 2.3e-119 433.0 350 67.4
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 5.2e-119 431.8 336 64.6
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.0e-114 416.0 356 64.3
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.9e-114 415.6 347 63.1
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.9e-114 415.6 347 63.1
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.7e-109 400.2 296 71.3
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 4.1e-108 395.6 301 68.1
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.6e-107 393.7 320 63.8
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 3.5e-107 392.5 327 63.9
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.7e-104 382.1 242 76.0
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 2.2e-93 346.7 225 74.2
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.4e-92 344.0 219 74.9
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.0e-90 336.3 354 55.1
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.9e-89 333.6 219 72.6
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 9.6e-89 331.3 228 76.3
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.9e-73 280.4 197 71.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.3e-71 272.3 262 58.4
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 5.3e-71 272.3 177 79.1
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.2e-61 240.4 180 68.3
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 6.7e-58 228.8 167 71.3
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.5e-45 185.7 123 74.0
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.1e-43 180.6 123 75.6
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.4e-42 177.9 123 74.0
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.8e-40 170.2 114 76.3
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 4.4e-33 146.4 121 67.8
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.5e-33 145.6 80 81.2
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 4.1e-31 139.8 118 68.6
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 7.0e-31 139.0 117 66.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 2.7e-30 137.1 117 60.7
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.0e-29 135.2 88 76.1
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 8.0e-27 125.6 285 27.7
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-22 111.3 86 62.8
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.5e-22 110.2 88 65.9
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.5e-20 104.0 91 60.4
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-19 101.7 78 59.0
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 4.7e-19 99.8 79 70.9
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.7e-16 91.3 56 67.9
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 9.2e-15 85.5 73 67.1
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.3e-13 80.9 43 81.4


User provided reference genes

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