Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 8.7e-224 780.0 404 100.0
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 3.6e-201 704.9 418 88.3
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.4e-141 506.9 385 74.5
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.3e-91 340.1 393 56.7
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 5.3e-88 328.9 414 51.4
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.6e-84 316.2 371 55.0
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 8.9e-43 178.7 278 45.7
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 8.3e-41 172.2 300 41.3
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.8e-36 157.1 261 42.1
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.1e-31 141.0 261 40.2
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 3.5e-31 140.2 430 31.2
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 4.6e-31 139.8 295 40.3
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 6.0e-31 139.4 255 39.6
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 6.0e-31 139.4 261 40.2
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 1.7e-30 137.9 304 37.8
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 5.1e-30 136.3 287 36.6
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 1.5e-29 134.8 255 41.2
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 1.9e-29 134.4 268 39.2
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 2.1e-28 131.0 329 32.8
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 3.6e-28 130.2 340 32.6
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 4.7e-28 129.8 263 37.6
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 8.1e-28 129.0 309 36.9
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 2.3e-27 127.5 294 36.4
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 5.2e-27 126.3 251 37.5
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 6.8e-27 125.9 293 35.5
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 8.9e-27 125.6 259 36.3
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 8.9e-27 125.6 281 33.5
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.5e-26 124.8 289 36.3
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 7.5e-26 122.5 221 43.9
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 9.9e-26 122.1 412 32.3
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 1.3e-25 121.7 311 34.4
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 2.2e-25 120.9 394 32.5
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 3.7e-25 120.2 473 29.2
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 8.3e-25 119.0 273 34.8
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 1.4e-24 118.2 254 37.8
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 1.4e-24 118.2 264 36.0
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 1.9e-24 117.9 235 37.0
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 2.4e-24 117.5 249 39.8
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 3.2e-24 117.1 249 37.3
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 3.2e-24 117.1 233 39.9
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.2e-24 117.1 250 36.4
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 4.1e-24 116.7 297 35.0
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 5.4e-24 116.3 252 40.1
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 5.4e-24 116.3 283 33.6
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 5.4e-24 116.3 250 36.4
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 5.4e-24 116.3 304 33.6
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 7.1e-24 115.9 249 35.3
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 7.1e-24 115.9 277 35.7
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 7.1e-24 115.9 301 35.2
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 7.1e-24 115.9 269 35.3
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 7.1e-24 115.9 273 34.1
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 9.2e-24 115.5 331 31.4
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 9.2e-24 115.5 235 37.9
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.2e-23 115.2 248 38.3
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 1.2e-23 115.2 231 39.4
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.6e-23 114.8 250 35.6
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.7e-23 114.0 244 39.8
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 2.7e-23 114.0 330 33.0
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 4.6e-23 113.2 237 38.8
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 6.0e-23 112.8 252 38.9
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 6.0e-23 112.8 252 35.7
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 7.8e-23 112.5 293 31.1
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 7.8e-23 112.5 408 30.9
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 7.8e-23 112.5 319 32.3
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 7.8e-23 112.5 269 34.6
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.3e-22 111.7 330 33.3
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 1.3e-22 111.7 269 35.3
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 1.7e-22 111.3 273 35.5
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 2.3e-22 110.9 298 32.6
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 3.0e-22 110.5 277 35.0
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 3.0e-22 110.5 311 32.8
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 3.9e-22 110.2 283 33.6
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.1e-22 109.8 253 36.4
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 5.1e-22 109.8 253 34.8
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 5.1e-22 109.8 329 30.4
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 6.6e-22 109.4 277 33.2
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 8.6e-22 109.0 304 30.9
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 8.6e-22 109.0 323 31.6
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 8.6e-22 109.0 287 35.9
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 2.5e-21 107.5 251 38.6
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 4.3e-21 106.7 282 33.3
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 4.3e-21 106.7 378 29.4
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 5.6e-21 106.3 240 33.8
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 5.6e-21 106.3 240 33.8
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 5.6e-21 106.3 249 36.1
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 5.6e-21 106.3 233 36.5
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 7.3e-21 105.9 309 31.7
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 7.3e-21 105.9 255 34.5
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 9.5e-21 105.5 219 39.7
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 9.5e-21 105.5 232 35.8
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 9.5e-21 105.5 291 33.0
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.2e-20 105.1 289 32.9
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 1.6e-20 104.8 288 29.9
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.6e-20 104.8 249 35.7
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.6e-20 104.8 232 35.3
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 2.8e-20 104.0 250 36.4
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 3.6e-20 103.6 252 32.1
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 3.6e-20 103.6 199 38.7
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.6e-20 103.6 289 32.5
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 4.7e-20 103.2 283 34.6
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 4.7e-20 103.2 247 36.0
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 4.7e-20 103.2 194 38.7
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 6.2e-20 102.8 234 37.6
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 6.2e-20 102.8 210 35.7
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 6.2e-20 102.8 251 37.1
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 8.1e-20 102.4 277 32.9
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.4e-19 101.7 280 32.1
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 2.4e-19 100.9 349 30.4
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 3.1e-19 100.5 219 36.1
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 3.1e-19 100.5 217 35.0
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 3.1e-19 100.5 240 35.4
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 3.1e-19 100.5 211 37.4
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 3.1e-19 100.5 230 36.5
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.1e-19 100.5 221 38.0
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 4.0e-19 100.1 273 34.1
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 8.9e-19 99.0 221 35.3
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 8.9e-19 99.0 253 36.0
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 1.5e-18 98.2 237 37.1
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.5e-18 98.2 252 34.9
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 2.6e-18 97.4 213 37.6
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 2.6e-18 97.4 200 39.0
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 2.6e-18 97.4 299 29.8
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.6e-18 97.4 251 34.3
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 2.6e-18 97.4 247 32.8
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 2.6e-18 97.4 288 31.9
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 2.6e-18 97.4 285 34.7
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 3.4e-18 97.1 210 39.0
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 4.4e-18 96.7 310 28.1
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 4.4e-18 96.7 280 33.2
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 1.3e-17 95.1 279 31.5
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.2e-17 94.4 196 38.3
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 3.8e-17 93.6 232 33.6
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 6.4e-17 92.8 215 34.4
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.1e-16 92.0 325 29.5
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.4e-16 91.7 257 33.5
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 2.4e-16 90.9 195 36.9
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 3.2e-16 90.5 241 34.9
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.2e-16 90.5 257 30.7
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 5.4e-16 89.7 296 29.7
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 5.4e-16 89.7 203 37.4
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 7.1e-16 89.4 291 30.6
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 7.1e-16 89.4 232 33.2
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 9.2e-16 89.0 272 34.6
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 1.2e-15 88.6 200 37.0
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 1.6e-15 88.2 226 34.5
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.6e-15 88.2 235 34.5
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 2.7e-15 87.4 145 46.9
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 2.7e-15 87.4 241 34.4
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 2.7e-15 87.4 255 32.5
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 4.6e-15 86.7 300 27.7
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 6.0e-15 86.3 290 31.4
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 6.0e-15 86.3 312 29.8
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 6.0e-15 86.3 261 33.3
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 7.8e-15 85.9 332 32.2
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 7.8e-15 85.9 419 27.0
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 2.3e-14 84.3 236 34.3
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 6.6e-14 82.8 259 29.7
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 6.6e-14 82.8 247 33.2
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 8.7e-14 82.4 251 32.7
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 1.5e-13 81.6 316 27.8
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 1.5e-13 81.6 286 33.6
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 5.6e-13 79.7 225 29.8
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 7.3e-13 79.3 201 34.8
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 2.1e-12 77.8 225 34.7
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 2.1e-12 77.8 225 34.7
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 2.8e-12 77.4 253 31.2
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 2.8e-12 77.4 306 26.8
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 3.1e-11 73.9 239 32.2
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 4.0e-11 73.6 224 31.2
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 9.0e-11 72.4 289 28.7
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 9.0e-11 72.4 264 29.2
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 2.0e-10 71.2 279 29.7
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 9.3e-08 62.4 232 27.6
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 9.3e-08 62.4 249 28.9
SGA_v2.0_scaffold36G14460 Striga asiatica HOM05D003672 ORTHO05D004121 1.0e-06 58.9 340 26.5
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 1.0e-06 58.9 64 53.1
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 5.1e-06 56.6 103 38.8


User provided reference genes

Program Settings