Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 0.0e+00 1154.8 571 100.0
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 0.0e+00 1133.6 573 98.6
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 0.0e+00 1095.1 574 94.8
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 1.8e-299 1031.9 574 89.7
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 5.3e-283 977.2 568 87.3
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 5.4e-280 967.2 577 84.9
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.6e-247 859.4 571 78.5
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 7.0e-219 764.2 564 69.3
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 6.5e-217 757.7 565 68.0
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.5e-216 756.5 565 68.8
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 6.1e-215 751.1 565 68.3
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 1.4e-214 750.0 561 67.4
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 2.3e-214 749.2 569 67.0
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 1.1e-211 740.3 596 64.9
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 2.4e-211 739.2 576 66.0
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 1.2e-210 736.9 562 67.4
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.0e-210 736.1 607 63.6
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 5.9e-210 734.6 562 65.7
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 1.7e-209 733.0 563 66.6
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 2.3e-209 732.6 558 65.6
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.5e-208 729.9 566 64.8
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.5e-208 729.2 566 64.8
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 2.1e-207 726.1 565 66.5
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 4.7e-207 724.9 560 67.5
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.4e-206 723.4 559 65.3
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 1.4e-206 723.4 564 65.4
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 1.4e-206 723.4 564 66.3
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 2.3e-206 722.6 546 67.6
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.3e-206 722.6 559 64.8
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 5.2e-206 721.5 537 68.2
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 6.8e-206 721.1 559 65.8
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 8.9e-206 720.7 562 65.1
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.2e-205 720.3 566 64.8
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 3.4e-205 718.8 564 64.5
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 5.7e-205 718.0 602 60.6
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 2.2e-204 716.1 563 66.4
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 8.3e-204 714.1 571 64.6
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 1.1e-203 713.8 571 63.7
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.4e-203 713.4 567 64.9
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 1.8e-203 713.0 571 65.5
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 9.2e-203 710.7 567 64.7
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 1.6e-202 709.9 559 65.8
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 3.5e-202 708.8 584 63.0
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 3.5e-202 708.8 594 63.1
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 1.0e-201 707.2 562 64.9
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 1.3e-201 706.8 562 65.8
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 1.7e-201 706.4 562 64.6
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 5.0e-201 704.9 566 64.0
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 6.6e-201 704.5 569 64.1
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 6.6e-201 704.5 566 65.4
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 8.6e-201 704.1 558 66.8
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 3.6e-199 698.7 558 64.9
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 3.6e-199 698.7 573 63.4
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 4.7e-199 698.4 556 64.2
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 4.7e-199 698.4 570 64.2
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 8.0e-199 697.6 556 66.2
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.0e-198 697.2 557 64.8
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 1.4e-198 696.8 561 64.5
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 2.0e-197 693.0 557 64.3
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 3.4e-197 692.2 556 65.8
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 1.7e-196 689.9 553 63.7
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.7e-196 689.9 567 62.4
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 6.4e-196 688.0 571 62.5
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 1.4e-195 686.8 564 61.9
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.9e-195 686.4 578 61.9
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 7.0e-195 684.5 559 64.0
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 9.2e-195 684.1 558 64.5
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 1.2e-194 683.7 590 62.2
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 1.6e-194 683.3 563 62.0
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 3.0e-193 679.1 567 61.7
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 2.8e-191 672.5 575 61.6
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 4.7e-191 671.8 539 64.4
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 8.9e-190 667.5 564 62.4
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.5e-189 666.8 564 62.1
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 2.0e-189 666.4 564 62.9
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 4.6e-186 655.2 540 62.2
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 2.3e-185 652.9 558 60.6
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 4.7e-183 645.2 638 55.8
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 2.1e-178 629.8 576 59.5
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 7.8e-178 627.9 581 55.9
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.5e-176 623.6 570 58.1
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 7.3e-176 621.3 510 62.5
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 4.9e-172 608.6 570 57.0
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 1.5e-168 597.0 553 57.3
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 6.4e-164 581.6 563 57.5
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 3.6e-159 565.8 578 52.2
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.0e-158 562.4 419 69.5
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 1.2e-154 550.8 599 50.3
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 3.7e-151 539.3 561 51.3
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 8.1e-151 538.1 447 64.4
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.8e-150 537.0 434 63.6
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 5.5e-139 498.8 395 65.8
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 2.2e-127 460.3 380 62.1
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.2e-125 454.5 483 52.4
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 2.2e-124 450.3 280 79.3
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 3.2e-123 446.4 503 46.7
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 3.7e-111 406.4 465 52.7
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.5e-96 357.8 254 73.6
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 2.2e-95 354.0 393 48.6
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.4e-94 351.3 261 69.7
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.3e-89 334.0 257 69.3
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 4.0e-89 333.2 559 37.0
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 3.7e-87 326.6 193 82.9
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 2.4e-86 323.9 347 50.1
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 4.7e-82 309.7 354 52.3
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 9.8e-80 302.0 441 40.6
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 4.1e-78 296.6 187 77.5
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.7e-76 291.2 350 49.7
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 8.6e-76 288.9 350 49.7
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 1.6e-74 284.6 314 52.5
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 6.8e-73 279.3 164 82.9
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.2e-72 278.5 181 75.1
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 9.8e-72 275.4 185 76.2
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 1.4e-70 271.6 291 49.1
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 8.6e-68 262.3 215 64.7
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 2.5e-67 260.8 363 41.6
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 2.9e-63 247.3 152 77.6
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 8.1e-58 229.2 224 53.6
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 3.8e-55 220.3 128 82.0
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 8.7e-36 156.0 346 32.4
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.5e-32 145.2 112 63.4
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 6.5e-31 139.8 110 64.5
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 3.0e-28 131.0 79 79.7
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 1.9e-27 128.3 149 54.4
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 9.6e-27 125.9 110 57.3
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 2.9e-23 114.4 110 50.0
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 7.2e-22 109.8 97 62.9
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 2.7e-21 107.8 101 54.5
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 8.7e-20 102.8 58 84.5
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 9.7e-19 99.4 110 48.2
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 1.0e-15 89.4 223 30.0
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 6.1e-13 80.1 53 81.1
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 6.1e-13 80.1 68 54.4
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 7.7e-08 63.2 70 48.6
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 2.2e-07 61.6 52 55.8
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 5.5e-06 57.0 35 71.4


User provided reference genes

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