Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 3.2e-99 365.5 254 100.0
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 5.3e-94 348.2 254 95.7
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.2e-50 204.1 222 65.8
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 2.0e-48 196.8 247 63.2
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.2e-39 166.8 244 69.7
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 3.5e-37 159.5 249 61.4
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 7.6e-32 141.7 259 50.6
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 4.9e-31 139.0 281 55.2
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 8.4e-31 138.3 271 48.7
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.9e-30 137.1 282 49.3
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.9e-30 137.1 282 49.3
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 3.2e-30 136.3 224 55.4
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 4.1e-30 136.0 282 55.0
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 5.4e-30 135.6 277 54.9
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 3.5e-29 132.9 283 51.2
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 4.6e-29 132.5 244 63.1
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-28 131.3 282 48.2
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-28 131.3 279 46.6
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.7e-28 130.6 276 47.8
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.7e-28 130.6 253 42.3
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 5.1e-28 129.0 271 54.6
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.5e-27 127.5 265 42.3
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.9e-27 127.1 272 47.1
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.9e-27 127.1 275 38.2
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 3.3e-27 126.3 270 49.3
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 4.3e-27 125.9 245 59.2
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 1.6e-26 124.0 279 47.3
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 3.6e-26 122.9 246 58.9
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 4.7e-26 122.5 247 60.3
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.7e-26 122.5 250 38.8
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 1.1e-25 121.3 244 45.1
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 1.1e-25 121.3 244 45.1
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 2.4e-25 120.2 281 35.9
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.1e-25 119.8 255 57.3
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 3.1e-25 119.8 258 51.6
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 4.0e-25 119.4 236 47.0
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-24 117.9 264 50.8
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 2.0e-24 117.1 285 46.7
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.4e-24 116.3 222 57.7
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.8e-24 115.5 236 53.4
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.3e-23 114.4 251 50.6
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-23 114.4 280 34.6
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.2e-23 113.6 282 52.1
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 4.9e-23 112.5 236 55.9
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.9e-22 110.5 232 51.3
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 5.4e-22 109.0 262 50.8
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 5.4e-22 109.0 220 50.0
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 5.4e-22 109.0 220 50.0
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 5.4e-22 109.0 288 48.6
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.3e-22 108.2 159 45.9
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.6e-21 107.5 262 51.1
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.6e-21 107.5 268 55.2
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.6e-21 107.5 268 55.2
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 2.7e-21 106.7 281 42.7
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.7e-21 106.7 250 48.8
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 6.0e-21 105.5 245 46.1
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.8e-21 105.1 282 52.1
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.3e-20 104.4 276 51.1
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.3e-20 104.4 229 45.9
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.7e-20 104.0 275 32.7
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.7e-20 104.0 268 44.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 2.3e-20 103.6 262 47.3
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 3.9e-20 102.8 223 37.7
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.9e-20 102.8 268 53.4
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 3.9e-20 102.8 157 43.9
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.1e-19 101.3 250 40.4
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.9e-19 100.5 221 50.2
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.3e-19 99.8 256 46.9
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 4.3e-19 99.4 280 52.1
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 4.3e-19 99.4 238 47.5
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 5.6e-19 99.0 226 54.4
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 7.3e-19 98.6 283 53.0
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 9.6e-19 98.2 275 35.3
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 9.6e-19 98.2 262 35.9
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 9.6e-19 98.2 222 48.2
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.3e-18 97.8 238 36.1
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.3e-18 97.8 255 49.8
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.6e-18 97.4 248 41.9
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 3.6e-18 96.3 256 52.7
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.6e-18 96.3 236 53.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.6e-18 96.3 236 53.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.6e-18 96.3 236 53.0
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 4.8e-18 95.9 239 41.4
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 6.2e-18 95.5 274 31.0
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.1e-18 95.1 231 44.6
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 8.1e-18 95.1 272 31.2
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 1.1e-17 94.7 279 32.3
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.4e-17 94.4 239 49.4
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.8e-17 94.0 256 45.3
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 2.4e-17 93.6 278 31.7
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.4e-17 93.6 253 44.3
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 3.1e-17 93.2 293 40.6
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 4.0e-17 92.8 266 30.8
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.3e-17 92.4 231 32.9
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-16 91.3 251 45.4
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.5e-16 90.9 247 54.3
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.0e-16 90.5 231 42.4
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 2.6e-16 90.1 234 47.4
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 2.6e-16 90.1 238 47.5
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 4.5e-16 89.4 267 43.1
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 4.5e-16 89.4 245 44.1
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 9.9e-16 88.2 227 46.7
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 9.9e-16 88.2 250 47.2
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 2.2e-15 87.0 293 30.7
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 1.1e-14 84.7 230 51.3
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 2.4e-14 83.6 230 49.6
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.4e-14 83.6 245 48.6
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.4e-14 83.6 243 48.1
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.4e-14 83.6 243 48.1
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.2e-14 83.2 252 47.2
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 4.2e-14 82.8 243 48.1
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 4.2e-14 82.8 242 48.3
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 5.4e-14 82.4 256 45.3
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 7.1e-14 82.0 256 46.1
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 1.6e-13 80.9 127 44.1
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 2.7e-13 80.1 246 44.3
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 3.5e-13 79.7 142 41.5
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 4.6e-13 79.3 256 46.1
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 4.6e-13 79.3 236 47.0
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 6.0e-13 79.0 245 46.9
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 6.0e-13 79.0 308 39.0
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.0e-12 78.2 207 56.0
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 1.0e-12 78.2 256 44.9
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.0e-12 78.2 245 46.9
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-12 77.8 273 42.1
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 3.9e-12 76.3 269 39.4
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 6.7e-12 75.5 302 38.1
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 2.5e-11 73.6 232 48.3
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 5.6e-11 72.4 251 44.6
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 3.1e-09 66.6 214 42.1
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 4.0e-09 66.2 248 38.7
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 5.3e-09 65.9 114 40.4
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 6.9e-09 65.5 250 38.4
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 2.6e-08 63.5 225 48.0
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 2.6e-08 63.5 126 39.7
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 4.5e-08 62.8 214 31.8
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 9.9e-08 61.6 221 30.8
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 1.7e-07 60.8 145 35.9
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 4.9e-07 59.3 134 40.3
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.4e-06 57.8 214 30.4
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 5.5e-06 55.8 262 51.5


User provided reference genes

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