Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 0.0e+00 1656.7 941 100.0
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 0.0e+00 1622.1 941 98.2
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 0.0e+00 1605.5 941 96.8
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 0.0e+00 1467.2 951 87.2
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 0.0e+00 1436.4 943 85.3
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 0.0e+00 1406.7 952 84.1
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 0.0e+00 1183.7 911 74.1
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 5.0e-299 1031.2 923 65.5
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 2.1e-281 972.6 927 61.5
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 2.9e-278 962.2 966 59.1
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 2.5e-274 949.1 937 63.5
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.8e-272 943.0 928 62.8
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 2.2e-270 936.0 945 61.2
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 6.4e-270 934.5 936 60.5
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.0e-267 927.2 926 60.5
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.8e-267 926.4 937 61.9
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 3.3e-266 922.2 910 59.5
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.4e-264 916.8 933 60.1
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 6.9e-264 914.4 933 60.2
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 3.4e-263 912.1 960 58.5
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.7e-262 909.8 931 60.7
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.9e-262 909.1 938 59.5
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 1.9e-261 906.4 929 61.0
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 5.5e-261 904.8 992 58.5
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 2.3e-259 899.4 1038 55.1
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 4.3e-258 895.2 959 59.3
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.6e-257 893.3 968 57.7
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 6.9e-256 887.9 968 59.2
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 9.0e-256 887.5 932 59.3
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 9.0e-256 887.5 971 58.7
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 2.0e-255 886.3 975 56.9
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 7.6e-255 884.4 928 58.9
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.9e-253 879.8 959 59.1
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.5e-250 870.2 930 59.4
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 2.5e-250 869.4 942 58.1
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 7.4e-250 867.8 966 58.0
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 9.7e-250 867.5 963 57.8
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 2.8e-249 865.9 1003 57.0
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 3.7e-249 865.5 934 59.2
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 6.3e-249 864.8 948 56.5
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 6.5e-246 854.7 976 55.7
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 7.2e-245 851.3 938 57.5
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 1.2e-244 850.5 936 58.0
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 1.1e-242 844.0 946 55.0
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 3.3e-242 842.4 895 58.9
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 4.3e-242 842.0 957 57.3
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.7e-241 840.1 845 60.1
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 3.7e-241 839.0 949 55.7
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.4e-240 837.0 948 56.4
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 5.3e-240 835.1 987 54.7
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.5e-237 826.2 933 55.3
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 2.5e-237 826.2 917 56.2
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 9.4e-237 824.3 935 56.0
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 6.1e-236 821.6 925 55.0
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.0e-235 820.8 938 55.0
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 6.7e-235 818.1 946 56.4
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 3.3e-234 815.8 940 55.2
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 2.2e-233 813.1 931 54.8
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 3.7e-233 812.4 929 54.5
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 4.8e-233 812.0 930 55.6
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 2.0e-231 806.6 949 53.2
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 3.5e-231 805.8 940 55.9
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.7e-231 804.7 852 58.7
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 6.5e-230 801.6 938 54.5
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 1.9e-229 800.0 928 53.8
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 3.2e-229 799.3 947 53.3
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 5.5e-229 798.5 926 55.5
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 5.5e-229 798.5 940 54.4
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 2.1e-228 796.6 929 53.6
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 3.6e-228 795.8 922 55.2
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 6.1e-228 795.0 925 55.4
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 7.4e-226 788.1 947 54.8
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 1.7e-225 786.9 931 55.1
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.4e-224 783.1 956 53.1
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.1e-224 782.7 921 55.2
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.9e-223 778.5 922 53.4
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 7.7e-223 778.1 920 52.3
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.1e-221 774.2 983 51.4
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 1.9e-221 773.5 931 53.9
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 4.2e-221 772.3 926 54.8
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 9.4e-221 771.2 936 53.8
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 1.2e-220 770.8 946 52.1
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 3.0e-219 766.1 932 52.8
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 4.0e-219 765.8 991 52.2
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 6.8e-219 765.0 922 54.3
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 8.8e-219 764.6 999 49.7
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 1.5e-218 763.8 935 53.7
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 2.6e-218 763.1 924 54.2
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 4.2e-213 745.7 934 52.1
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 4.0e-211 739.2 984 50.4
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.2e-207 727.6 878 52.2
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.2e-205 719.2 609 69.8
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.5e-202 710.7 962 49.9
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 1.6e-180 637.5 926 47.1
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 5.4e-176 622.5 949 45.0
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 8.6e-174 615.1 960 44.2
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 9.6e-173 611.7 820 51.1
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.9e-168 597.4 922 44.3
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 7.8e-167 592.0 695 55.7
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 1.9e-149 534.3 442 62.7
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 2.1e-143 514.2 522 64.2
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 9.0e-139 498.8 615 57.6
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 2.9e-137 493.8 396 66.4
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 5.1e-126 456.4 588 51.4
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 2.5e-120 437.6 898 39.5
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 8.0e-103 379.4 611 44.0
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.5e-98 363.6 493 52.3
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.1e-78 297.7 269 61.7
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.5e-72 278.9 309 55.3
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.7e-71 273.9 326 54.6
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 1.2e-69 269.2 310 56.5
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 5.1e-65 253.8 402 48.5
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.1e-63 246.5 324 58.0
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 1.2e-61 242.7 266 50.8
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.4e-61 240.7 264 49.2
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 3.2e-59 234.6 976 28.2
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 3.8e-52 211.1 1146 27.9
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.9e-51 208.8 192 59.9
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 4.2e-51 207.6 227 56.4
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 1.3e-49 202.6 366 43.2
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.1e-32 146.4 757 27.5
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 9.6e-32 143.3 342 44.7
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.4e-30 139.4 204 46.1
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.4e-30 138.7 85 83.5
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.4e-30 138.7 363 41.3
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.3e-30 137.5 83 84.3
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.3e-30 137.5 96 75.0
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.1e-27 129.8 693 25.1
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 3.2e-27 128.3 132 53.0
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.8e-25 122.5 126 55.6
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.8e-25 122.5 145 51.7
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 1.1e-24 119.8 117 56.4
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 1.1e-24 119.8 219 45.2
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.6e-23 115.9 138 52.2
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 1.4e-22 112.8 90 64.4
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 6.9e-22 110.5 90 64.4
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.0e-17 96.7 115 50.4
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 5.7e-16 90.9 72 69.4
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 8.2e-15 87.0 52 84.6
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.5e-13 81.3 52 82.7
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.3e-12 79.7 85 60.0
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.4e-11 76.3 67 64.2
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-10 73.2 46 82.6
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.7e-10 72.0 94 48.9
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 1.4e-09 69.7 140 40.0
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.4e-09 69.7 56 66.1
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.0e-08 65.9 58 58.6
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 8.2e-07 60.5 52 63.5
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 9.1e-06 57.0 94 43.6


User provided reference genes

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