Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 8.8e-296 1019.6 545 100.0
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.2e-290 1001.1 546 98.7
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.4e-272 942.6 545 93.9
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 7.6e-207 724.2 554 76.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.1e-200 702.2 668 65.4
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.9e-198 695.7 677 64.4
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.0e-186 656.4 551 71.9
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.2e-89 334.0 710 38.2
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.3e-84 318.2 616 40.7
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 4.5e-82 309.7 644 37.9
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 3.2e-80 303.5 659 39.5
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 4.7e-79 299.7 717 37.1
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 6.5e-73 279.3 622 38.1
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.6e-71 274.6 542 39.9
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 2.1e-71 274.2 547 37.8
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 8.0e-71 272.3 220 70.9
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 3.9e-70 270.0 680 36.2
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.7e-65 254.6 614 38.3
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.5e-64 251.5 645 38.9
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 1.9e-64 251.1 688 34.2
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 2.3e-62 244.2 555 37.3
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 3.0e-62 243.8 673 33.4
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 7.5e-61 239.2 763 31.3
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.3e-60 238.4 738 33.7
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.1e-59 235.3 664 32.5
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.8e-59 234.6 532 39.1
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 2.0e-58 231.1 730 34.7
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.0e-58 231.1 667 35.7
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 5.9e-58 229.6 735 32.7
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 3.8e-57 226.9 671 33.4
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.5e-56 224.9 576 34.0
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 6.1e-55 219.5 640 38.0
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.0e-54 218.8 663 37.1
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.0e-54 218.8 168 71.4
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 2.3e-54 217.6 533 35.6
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 2.3e-54 217.6 578 34.1
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 8.8e-54 215.7 723 32.0
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 1.2e-53 215.3 564 33.9
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 2.0e-53 214.5 550 34.9
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 2.8e-52 210.7 532 37.2
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-51 208.8 698 30.5
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.7e-49 201.4 702 30.6
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.7e-49 201.4 702 30.6
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.9e-49 200.7 673 33.4
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.1e-48 198.7 653 29.7
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 1.5e-48 198.4 633 34.9
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 7.2e-48 196.1 730 32.6
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.2e-48 196.1 730 29.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.7e-47 193.4 672 33.9
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.8e-46 191.4 556 33.8
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 5.2e-46 189.9 619 35.4
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 4.4e-45 186.8 649 33.9
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.3e-44 185.3 617 35.2
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.4e-43 181.8 704 33.2
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.4e-43 181.0 719 32.8
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 3.2e-43 180.6 621 35.4
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 4.1e-43 180.3 151 66.2
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 5.4e-43 179.9 622 35.7
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.6e-42 178.3 663 32.4
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 5.0e-41 173.3 549 34.6
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 6.6e-41 172.9 523 33.8
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.5e-40 171.8 272 49.6
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 5.6e-40 169.9 679 27.7
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 9.5e-40 169.1 481 35.3
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.6e-39 168.3 620 29.8
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 8.0e-39 166.0 610 31.8
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 2.3e-38 164.5 537 33.0
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 2.3e-38 164.5 582 29.6
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 5.2e-38 163.3 790 29.6
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 5.2e-38 163.3 597 32.2
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.2e-37 162.2 563 31.6
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.2e-37 162.2 203 56.7
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.5e-37 161.8 651 32.7
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.6e-37 161.0 510 32.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 2.9e-36 157.5 137 63.5
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.7e-36 157.1 572 34.3
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 8.3e-36 156.0 521 31.1
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.9e-35 154.8 653 32.3
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 2.4e-35 154.5 593 33.1
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 2.4e-35 154.5 587 33.2
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.2e-35 154.1 240 43.3
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 5.4e-35 153.3 521 31.1
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 7.0e-35 152.9 583 35.2
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 9.2e-35 152.5 654 32.1
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.7e-34 151.0 726 31.3
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 3.5e-34 150.6 581 32.9
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.0e-33 149.1 143 67.8
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.7e-33 148.3 599 28.4
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 5.0e-33 146.7 130 76.9
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 5.0e-33 146.7 620 31.0
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 8.6e-33 146.0 291 45.0
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.1e-32 145.6 611 28.2
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.5e-32 145.2 171 59.1
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 3.3e-32 144.1 221 55.2
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 4.3e-32 143.7 675 30.7
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 2.1e-31 141.4 164 51.2
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.8e-31 141.0 625 31.5
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 3.6e-31 140.6 556 29.5
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 6.2e-31 139.8 556 28.1
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-30 139.0 563 29.3
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 3.1e-30 137.5 170 50.6
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 5.2e-30 136.7 585 32.1
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 6.8e-30 136.3 157 54.8
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 8.9e-30 136.0 88 78.4
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 8.9e-30 136.0 88 78.4
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 2.0e-29 134.8 655 31.3
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.4e-29 134.0 652 28.2
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 5.8e-29 133.3 88 76.1
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.3e-28 132.1 596 29.0
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 2.2e-28 131.3 626 31.0
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 4.9e-28 130.2 691 28.4
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 6.4e-28 129.8 622 32.6
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.6e-26 125.2 617 31.4
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 4.6e-26 123.6 282 36.9
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.0e-25 122.5 161 63.4
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 5.1e-25 120.2 656 26.1
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.6e-25 119.8 237 35.9
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 8.6e-25 119.4 158 46.8
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.5e-24 117.9 226 50.0
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 7.3e-24 116.3 85 69.4
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.2e-23 115.5 163 60.7
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.7e-23 113.6 93 64.5
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 4.7e-23 113.6 133 50.4
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 8.1e-23 112.8 575 32.0
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 8.1e-23 112.8 628 26.8
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 4.0e-22 110.5 463 27.0
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 4.4e-21 107.1 639 28.2
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.4e-19 102.1 504 32.3
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.4e-19 102.1 544 25.9
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.9e-19 101.7 166 47.0
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 2.4e-19 101.3 72 73.6
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.9e-17 94.0 279 36.6
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 5.1e-17 93.6 669 27.5
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 5.1e-17 93.6 482 29.5
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.5e-16 91.3 386 31.3
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 3.3e-16 90.9 660 27.3
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 9.6e-16 89.4 209 43.5
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.2e-13 82.4 655 26.0
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 1.5e-13 82.0 642 28.7
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 2.6e-13 81.3 475 25.7
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 2.2e-12 78.2 90 51.1
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 5.4e-11 73.6 642 22.9
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 1.6e-07 62.0 444 26.6
PSO541G1879 Papaver somniferum HOM05D005042 ORTHO05D006080 6.9e-06 56.6 79 41.8


User provided reference genes

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