Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 4.4e-239 830.9 418 100.0
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 1.5e-231 805.8 418 97.1
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 1.9e-213 745.7 419 89.7
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 5.3e-200 701.0 420 83.1
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 2.6e-199 698.7 420 82.9
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 2.3e-195 685.6 420 81.9
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 4.8e-193 677.9 420 81.9
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 7.2e-173 610.9 422 73.2
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 2.1e-172 609.4 422 71.3
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 6.1e-172 607.8 413 73.1
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 4.0e-171 605.1 416 70.7
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 6.3e-169 597.8 419 71.1
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 5.9e-167 591.3 420 68.1
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 6.6e-166 587.8 420 70.5
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 8.6e-166 587.4 407 70.8
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 1.1e-165 587.0 417 69.8
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 1.1e-165 587.0 418 69.6
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 7.3e-165 584.3 404 72.0
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.2e-164 583.6 410 68.3
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 1.6e-164 583.2 407 71.3
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 4.7e-164 581.6 413 70.2
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 1.0e-163 580.5 421 68.9
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 3.0e-163 578.9 418 68.2
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 5.2e-163 578.2 417 67.1
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 1.2e-162 577.0 417 69.8
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 4.4e-162 575.1 420 68.1
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 7.5e-162 574.3 422 69.9
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 9.8e-162 573.9 419 67.1
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 9.8e-162 573.9 422 69.0
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 1.7e-161 573.2 414 68.4
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 2.2e-161 572.8 415 68.4
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 2.2e-161 572.8 424 66.7
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 6.4e-161 571.2 420 67.9
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 1.8e-160 569.7 423 68.8
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 1.6e-159 566.6 404 70.0
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 1.7e-158 563.1 402 68.2
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 2.3e-158 562.8 400 70.2
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 3.9e-158 562.0 407 69.3
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 5.0e-158 561.6 410 66.6
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 8.6e-158 560.8 407 69.3
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 1.9e-157 559.7 424 68.2
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 3.3e-157 558.9 420 66.2
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 4.7e-156 555.1 403 68.7
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 8.0e-156 554.3 405 69.4
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 1.4e-155 553.5 411 68.4
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 4.0e-155 552.0 421 67.0
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 6.8e-155 551.2 438 64.2
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 1.5e-154 550.1 408 66.4
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 2.0e-154 549.7 406 67.0
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 3.4e-154 548.9 439 64.2
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 3.4e-154 548.9 400 69.0
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 4.4e-154 548.5 405 68.6
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 7.5e-154 547.7 405 67.4
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 9.8e-154 547.4 406 65.3
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 3.2e-152 542.3 411 65.9
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 3.2e-152 542.3 415 65.8
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 9.2e-152 540.8 417 64.7
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 1.2e-151 540.4 405 66.9
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 2.0e-151 539.7 418 66.0
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 7.8e-151 537.7 417 65.5
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 2.8e-148 529.3 417 63.3
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 6.8e-147 524.6 417 62.8
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 1.2e-146 523.9 401 64.3
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 2.6e-146 522.7 403 65.3
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 8.3e-145 517.7 420 63.3
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 1.6e-143 513.5 417 60.9
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 6.0e-143 511.5 411 61.6
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 3.6e-140 502.3 437 59.7
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 6.2e-140 501.5 411 62.3
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 2.6e-138 496.1 407 60.2
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 7.3e-133 478.0 403 57.3
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.3e-124 450.7 286 74.1
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.2e-122 444.1 318 67.9
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 3.7e-116 422.5 328 64.9
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 6.0e-111 405.2 343 59.5
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 7.9e-111 404.8 400 50.0
Peaxi162Scf00188g00923 Petunia axillaris HOM05D006847 ORTHO05D008685 1.3e-110 404.1 259 81.5
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 2.8e-108 396.4 408 51.0
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 1.1e-107 394.4 429 49.9
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.0e-106 390.2 421 48.0
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.8e-102 377.1 379 50.1
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 5.7e-101 372.1 421 46.6
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 9.7e-101 371.3 298 65.4
Solyc05g010640.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 3.7e-100 369.4 195 97.4
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.9e-96 357.1 438 44.5
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 3.0e-94 349.7 311 57.9
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.9e-94 349.4 445 42.2
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 4.5e-90 335.9 455 41.3
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 9.1e-67 258.5 141 82.3
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 4.5e-66 256.1 149 77.2
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 6.5e-65 252.3 141 80.1
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 1.5e-64 251.1 292 47.9
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 2.0e-61 240.7 145 75.2
CSS0029748 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 1.4e-59 234.6 256 53.1
Psat2g097480 Pisum sativum HOM05D006847 ORTHO05D008685 9.1e-59 231.9 249 53.8
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 2.0e-58 230.7 164 61.0
SEGI_24845 Sequoiadendron giganteum HOM05D006847 ORTHO05D008685 2.1e-55 220.7 263 49.0
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 3.0e-54 216.9 107 100.0
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 2.0e-53 214.2 268 46.6
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.0e-37 161.0 140 51.4
Nn4g23574 Nelumbo nucifera HOM05D006847 ORTHO05D008685 9.8e-37 158.7 140 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 1.3e-33 148.3 122 57.4
CSS0043445 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D000152 2.1e-31 141.0 137 54.0
CAN.G992.5 Capsicum annuum HOM05D006847 ORTHO05D008685 1.1e-22 112.1 208 40.9
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 2.4e-22 110.9 186 34.4
arahy.Tifrunner.gnm1.ann1.UQ0TL8 Arachis hypogaea HOM05D006847 ORTHO05D008685 1.7e-20 104.8 94 57.4
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 6.4e-20 102.8 50 88.0
AagrBONN_evm.TU.Sc2ySwM_117.3730 Anthoceros agrestis HOM05D006847 ORTHO05D008685 1.9e-19 101.3 224 32.1
SMO143G0243 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.3e-17 95.1 102 43.1
Sabra10G0104900 Salix brachista HOM05D006847 ORTHO05D008685 8.7e-17 92.4 103 51.5
Solyc01g081280.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 8.7e-17 92.4 51 86.3
SMO143G0192 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 2.5e-16 90.9 102 40.2
Actinidia31922 Actinidia chinensis HOM05D006847 ORTHO05D008685 3.3e-16 90.5 57 73.7
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 9.6e-16 89.0 138 39.1
SMO186G0008 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 2.8e-15 87.4 107 38.3
SMO265G0021 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 5.2e-14 83.2 102 39.2
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 3.8e-12 77.0 175 31.4
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 4.9e-12 76.6 169 30.8
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 3.2e-11 73.9 160 28.8
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 7.1e-11 72.8 169 29.6
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 9.3e-11 72.4 169 30.2
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 9.3e-11 72.4 168 29.2
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 2.1e-10 71.2 168 27.4
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 2.7e-10 70.9 169 29.0
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 3.5e-10 70.5 173 27.2
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 3.5e-10 70.5 168 29.2
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 3.5e-10 70.5 168 28.0
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 4.6e-10 70.1 160 26.2
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 6.0e-10 69.7 160 28.1
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 1.3e-09 68.6 168 28.0
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.3e-09 68.6 160 28.8
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 3.9e-09 67.0 177 23.7
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 5.1e-09 66.6 161 27.3
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 8.7e-09 65.9 175 29.1
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 1.1e-08 65.5 160 27.5
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 1.5e-08 65.1 175 25.7
AagrBONN_evm.TU.Sc2ySwM_368.978 Anthoceros agrestis HOM05D016606 ORTHO05D018318 2.5e-08 64.3 167 28.7
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.5e-08 64.3 187 26.2
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 2.1e-07 61.2 163 25.8
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 2.8e-07 60.8 158 25.9
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 3.1e-06 57.4 164 26.2


User provided reference genes

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