Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 5.8e-40 167.2 87 100.0
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 5.4e-38 160.6 87 96.6
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.7e-31 137.9 89 86.5
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 2.7e-13 78.6 75 58.7
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 8.7e-12 73.6 73 53.4
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 2.5e-11 72.0 67 56.7
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 3.3e-11 71.6 72 62.5
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 5.6e-11 70.9 73 50.7
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 5.6e-11 70.9 73 63.0
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 9.6e-11 70.1 75 56.0
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 9.6e-11 70.1 66 56.1
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.6e-11 70.1 67 62.7
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.3e-10 69.7 73 53.4
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 1.3e-10 69.7 91 49.5
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.3e-10 69.7 88 50.0
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 2.8e-10 68.6 65 53.8
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 3.6e-10 68.2 71 52.1
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 3.6e-10 68.2 67 61.2
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 3.6e-10 68.2 86 45.3
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.8e-10 67.8 75 50.7
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 4.8e-10 67.8 85 49.4
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.2e-10 67.4 85 44.7
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 6.2e-10 67.4 71 53.5
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 8.1e-10 67.0 65 53.8
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 8.1e-10 67.0 75 49.3
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 8.1e-10 67.0 64 54.7
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 8.1e-10 67.0 89 42.7
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.1e-09 66.6 87 42.5
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-09 66.6 67 61.2
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.1e-09 66.6 73 54.8
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-09 66.2 73 46.6
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-09 66.2 73 52.1
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.4e-09 66.2 73 52.1
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 1.4e-09 66.2 69 65.2
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.8e-09 65.9 66 51.5
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.8e-09 65.9 70 57.1
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.8e-09 65.9 73 49.3
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 2.4e-09 65.5 73 47.9
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 2.4e-09 65.5 84 50.0
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.4e-09 65.5 94 45.7
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 2.4e-09 65.5 72 52.8
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 2.4e-09 65.5 76 47.4
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.1e-09 65.1 81 43.2
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.1e-09 65.1 75 45.3
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 3.1e-09 65.1 66 48.5
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 3.1e-09 65.1 87 55.2
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 3.1e-09 65.1 87 56.3
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 3.1e-09 65.1 75 49.3
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 5.3e-09 64.3 83 49.4
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.3e-09 64.3 83 49.4
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 5.3e-09 64.3 73 49.3
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 5.3e-09 64.3 65 52.3
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 6.9e-09 63.9 66 48.5
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 6.9e-09 63.9 89 46.1
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 6.9e-09 63.9 79 48.1
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 9.0e-09 63.5 66 47.0
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 9.0e-09 63.5 74 50.0
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 9.0e-09 63.5 86 48.8
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.2e-08 63.2 65 64.6
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.2e-08 63.2 71 46.5
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.2e-08 63.2 71 46.5
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.2e-08 63.2 89 46.1
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 1.2e-08 63.2 77 42.9
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.5e-08 62.8 73 49.3
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.5e-08 62.8 78 42.3
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 1.5e-08 62.8 80 48.8
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 1.5e-08 62.8 66 60.6
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 1.5e-08 62.8 75 50.7
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 1.5e-08 62.8 80 46.2
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.0e-08 62.4 84 54.8
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 2.0e-08 62.4 91 42.9
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 2.0e-08 62.4 76 55.3
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.0e-08 62.4 65 50.8
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 2.6e-08 62.0 71 47.9
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.6e-08 62.0 71 45.1
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.6e-08 62.0 80 56.2
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 2.6e-08 62.0 76 42.1
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 2.6e-08 62.0 77 42.9
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 3.4e-08 61.6 66 47.0
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.4e-08 61.6 66 60.6
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.4e-08 61.2 66 50.0
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 4.4e-08 61.2 76 43.4
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 4.4e-08 61.2 73 47.9
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 5.8e-08 60.8 83 43.4
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 5.8e-08 60.8 73 43.8
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 5.8e-08 60.8 66 45.5
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 5.8e-08 60.8 84 45.2
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 7.6e-08 60.5 73 52.1
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 7.6e-08 60.5 85 50.6
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 9.9e-08 60.1 89 44.9
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 9.9e-08 60.1 72 47.2
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 9.9e-08 60.1 77 41.6
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 1.7e-07 59.3 82 45.1
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 2.2e-07 58.9 91 39.6
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.9e-07 58.5 77 46.8
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 2.9e-07 58.5 60 51.7
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 2.9e-07 58.5 65 49.2
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 3.8e-07 58.2 69 52.2
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.9e-07 57.8 65 49.2
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 6.4e-07 57.4 82 37.8
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 6.4e-07 57.4 78 39.7
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 6.4e-07 57.4 65 47.7
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 8.4e-07 57.0 65 46.2
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 8.4e-07 57.0 75 53.3
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.4e-06 56.2 72 54.2
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 1.4e-06 56.2 67 47.8
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 2.4e-06 55.5 78 42.3
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 2.4e-06 55.5 62 46.8
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 2.4e-06 55.5 62 46.8
BraA08t32447Z Brassica rapa HOM05D012335 ORTHO05D014421 2.4e-06 55.5 65 43.1
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.4e-06 55.5 62 48.4
A08p04230 Brassica napus HOM05D012335 ORTHO05D014421 3.2e-06 55.1 65 43.1
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 3.2e-06 55.1 80 45.0
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 4.2e-06 54.7 72 48.6
BolC8t47255H Brassica oleracea HOM05D012335 ORTHO05D014421 4.2e-06 54.7 65 43.1
Carub.0001s3819 Capsella rubella HOM05D012335 ORTHO05D014421 4.2e-06 54.7 68 41.2
C08p04500 Brassica napus HOM05D012335 ORTHO05D014421 5.4e-06 54.3 65 43.1
CANSAT64G1761 Cannabis sativa HOM05D005816 ORTHO05D006915 5.4e-06 54.3 93 41.9
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 7.1e-06 53.9 76 40.8
PSO017G0024 Papaver somniferum HOM05D005816 ORTHO05D006915 7.1e-06 53.9 24 95.8
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.1e-06 53.9 87 42.5
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 7.1e-06 53.9 74 40.5
BcaB04g17372 Brassica carinata HOM05D012335 ORTHO05D014421 9.3e-06 53.5 65 43.1


User provided reference genes

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