Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 4.1e-65 251.1 119 100.0
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 6.6e-63 243.8 119 97.5
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 5.8e-59 230.7 122 91.8
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 1.4e-41 172.9 123 72.4
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 2.3e-39 165.6 121 70.2
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 1.5e-38 162.9 120 70.0
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 1.1e-36 156.8 120 69.2
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 2.2e-18 95.9 93 52.7
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 3.2e-17 92.0 117 47.0
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 4.2e-17 91.7 133 42.1
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 7.2e-17 90.9 98 45.9
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.0e-15 87.0 115 43.5
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 1.8e-15 86.3 132 42.4
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 2.0e-14 82.8 128 45.3
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 4.3e-14 81.6 99 44.4
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 5.7e-14 81.3 47 63.8
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 9.7e-14 80.5 93 38.7
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 1.3e-13 80.1 139 38.1
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 1.3e-13 80.1 56 57.1
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 4.8e-13 78.2 124 41.9
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 6.3e-13 77.8 49 61.2
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 8.2e-13 77.4 105 41.0
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 1.1e-12 77.0 129 38.0
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 1.1e-12 77.0 117 39.3
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.4e-12 76.6 105 40.0
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 1.8e-12 76.3 59 50.8
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 1.8e-12 76.3 115 35.7
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 1.8e-12 76.3 47 59.6
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 2.4e-12 75.9 119 40.3
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 2.4e-12 75.9 59 50.8
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 2.4e-12 75.9 48 62.5
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 3.1e-12 75.5 105 40.0
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 3.1e-12 75.5 107 38.3
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 3.1e-12 75.5 124 36.3
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 4.1e-12 75.1 106 41.5
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 5.3e-12 74.7 49 63.3
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 5.3e-12 74.7 49 63.3
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 5.3e-12 74.7 120 41.7
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 1.5e-11 73.2 99 41.4
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.4e-11 72.0 120 35.8
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 7.7e-11 70.9 119 38.7
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 1.0e-10 70.5 100 41.0
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 1.3e-10 70.1 124 35.5
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 1.7e-10 69.7 94 33.0
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 2.2e-10 69.3 120 35.0
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 6.5e-10 67.8 61 49.2
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 8.5e-10 67.4 50 54.0
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 1.9e-09 66.2 44 54.5
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 3.2e-09 65.5 43 53.5
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 3.2e-09 65.5 40 60.0
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 4.2e-09 65.1 44 52.3
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 4.2e-09 65.1 44 52.3
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 4.2e-09 65.1 44 52.3
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 4.2e-09 65.1 44 52.3
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 4.2e-09 65.1 44 52.3
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 5.5e-09 64.7 59 49.2
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 9.4e-09 63.9 44 59.1
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 9.4e-09 63.9 44 50.0
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 9.4e-09 63.9 124 38.7
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 9.4e-09 63.9 53 45.3
SGA_v2.0_scaffold36G14535 Striga asiatica HOM05D007757 ORTHO05D009619 9.4e-09 63.9 57 43.9
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.2e-08 63.5 43 60.5
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.2e-08 63.5 45 46.7
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 2.1e-08 62.8 44 50.0
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 2.1e-08 62.8 55 45.5
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 2.1e-08 62.8 55 45.5
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 2.1e-08 62.8 55 45.5
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 2.1e-08 62.8 55 45.5
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 2.1e-08 62.8 44 50.0
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 2.1e-08 62.8 55 45.5
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 2.1e-08 62.8 114 38.6
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 2.7e-08 62.4 87 36.8
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 2.7e-08 62.4 87 36.8
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 2.7e-08 62.4 87 36.8
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 2.7e-08 62.4 44 47.7
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 3.6e-08 62.0 41 51.2
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 3.6e-08 62.0 43 58.1
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 4.7e-08 61.6 99 38.4
Ciclev10017153m.g Citrus clementina HOM05D007757 ORTHO05D009619 6.1e-08 61.2 120 35.0
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 1.0e-07 60.5 48 47.9
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.0e-07 60.5 48 47.9
Nn3g17848 Nelumbo nucifera HOM05D021434 ORTHO05D009619 8.8e-07 57.4 52 42.3
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 2.0e-06 56.2 113 33.6
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 3.3e-06 55.5 42 50.0


User provided reference genes

Program Settings