Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 2.5e-311 1071.2 520 100.0
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 3.3e-276 954.5 466 98.1
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 1.3e-264 916.0 516 85.7
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 4.2e-255 884.4 569 76.6
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 6.7e-253 877.1 569 77.0
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 7.3e-223 777.3 458 81.9
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 4.7e-198 694.9 345 96.8
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.3e-195 686.8 481 67.8
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.8e-195 685.3 478 68.0
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 4.9e-195 684.9 519 64.7
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 3.9e-192 675.2 516 63.8
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.2e-187 659.4 520 62.1
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.6e-185 653.3 518 63.1
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.7e-184 649.8 518 62.9
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 5.1e-184 648.3 468 67.5
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.5e-183 646.0 519 60.7
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 1.6e-182 643.3 523 61.4
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 1.6e-182 643.3 504 62.7
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.6e-182 642.1 506 61.9
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 6.2e-182 641.3 502 62.5
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 9.0e-181 637.5 523 60.2
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 1.5e-180 636.7 517 60.9
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 2.9e-179 632.5 593 55.5
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 6.4e-179 631.3 482 62.9
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.4e-178 630.2 517 61.7
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 1.0e-176 624.0 467 64.5
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 3.9e-176 622.1 518 59.5
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 3.9e-176 622.1 518 59.7
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 2.5e-175 619.4 516 58.5
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.5e-175 619.4 468 64.1
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 5.6e-175 618.2 525 57.7
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 7.4e-175 617.8 467 64.2
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 3.7e-174 615.5 515 58.4
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 4.8e-174 615.1 514 60.7
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 2.4e-173 612.8 468 64.1
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 5.3e-173 611.7 466 64.2
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 5.3e-173 611.7 467 64.7
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 3.4e-172 609.0 539 56.8
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.0e-171 607.4 533 56.5
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 6.5e-171 604.7 460 65.0
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 1.9e-170 603.2 517 59.4
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 4.2e-170 602.1 516 56.8
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 5.5e-170 601.7 471 64.3
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 7.1e-170 601.3 468 62.4
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 1.2e-169 600.5 461 64.0
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 1.2e-169 600.5 467 61.5
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 2.7e-169 599.4 464 61.4
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 1.8e-168 596.7 523 57.9
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 1.8e-168 596.7 506 58.5
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 3.9e-168 595.5 467 61.2
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 6.7e-168 594.7 515 58.3
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 8.7e-168 594.3 467 60.2
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 5.7e-167 591.7 515 56.5
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.7e-166 589.0 561 53.3
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 3.7e-166 589.0 515 56.5
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 3.1e-165 585.9 516 57.8
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 9.0e-165 584.3 499 57.1
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.2e-164 583.9 458 60.9
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.2e-164 583.9 456 61.4
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 3.4e-164 582.4 469 61.6
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 4.5e-164 582.0 519 56.6
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.7e-163 580.1 464 61.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 2.9e-163 579.3 467 60.8
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 6.5e-163 578.2 469 60.1
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 7.1e-162 574.7 469 59.7
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 6.1e-161 571.6 471 59.2
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.3e-160 569.7 482 58.9
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.3e-160 569.7 482 58.9
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 6.7e-160 568.2 488 56.6
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.5e-159 566.2 460 60.0
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 7.4e-159 564.7 522 56.5
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 6.9e-157 558.1 520 54.8
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 6.9e-157 558.1 421 64.1
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 4.5e-156 555.4 523 53.5
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.3e-155 553.9 488 55.5
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.9e-155 552.7 463 59.2
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 6.5e-155 551.6 519 54.3
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 2.5e-154 549.7 488 56.4
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 2.5e-154 549.7 521 53.2
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.7e-153 546.2 488 55.1
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.7e-153 546.2 463 57.9
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 1.4e-152 543.9 519 52.8
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 1.4e-152 543.9 519 52.8
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 8.8e-152 541.2 628 47.9
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 5.7e-151 538.5 504 55.6
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.1e-146 524.2 502 51.8
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 5.1e-144 515.4 505 50.5
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 4.4e-143 512.3 475 55.2
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 9.7e-143 511.1 533 47.7
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 2.2e-142 510.0 511 52.6
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 2.4e-141 506.5 514 49.0
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.3e-131 474.2 490 49.4
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 4.2e-130 469.2 381 59.1
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 9.4e-130 468.0 521 48.4
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 9.5e-114 414.8 322 61.5
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 1.7e-94 350.9 524 38.0
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 4.9e-94 349.4 526 38.6
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 8.3e-94 348.6 348 51.4
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 2.7e-92 343.6 526 36.5
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.4e-88 331.3 290 58.3
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.7e-83 314.3 289 54.0
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.5e-82 311.2 276 56.5
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 2.8e-81 307.0 276 56.2
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 6.2e-81 305.8 300 48.0
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 2.2e-78 297.4 510 37.5
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 8.4e-78 295.4 265 56.6
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 6.0e-76 289.3 219 59.4
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 3.8e-70 270.0 247 54.3
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 9.3e-69 265.4 309 47.2
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 1.6e-57 228.0 301 41.9
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 1.1e-45 188.7 202 50.5
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.8e-35 154.8 86 81.4
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 2.8e-33 147.5 342 30.1
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 6.3e-33 146.4 181 44.2
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.2e-28 132.1 75 80.0
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 2.7e-20 104.4 92 53.3
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.3e-18 97.4 94 46.8
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.1e-16 89.4 53 75.5
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.6e-15 88.6 53 75.5
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.6e-15 88.6 100 42.0
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.0e-15 88.2 112 39.3
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.9e-14 84.3 53 75.5
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.8e-14 84.0 53 71.7
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.8e-14 84.0 53 71.7
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.1e-12 78.2 75 53.3
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 8.0e-12 76.3 39 87.2
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 2.6e-10 71.2 69 50.7
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.2e-09 68.2 190 25.8
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 4.5e-07 60.5 54 61.1
Ca_29313_v3 Cicer arietinum L. HOM05D002042 ORTHO05D008431 5.9e-07 60.1 140 27.1
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 1.0e-06 59.3 248 23.4
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.2e-06 58.2 53 58.5
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 6.5e-06 56.6 100 42.0


User provided reference genes

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