Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 8.4e-165 583.6 285 100.0
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 2.5e-164 582.0 285 99.3
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 3.3e-161 571.6 285 97.2
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 9.7e-153 543.5 282 92.2
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 9.1e-151 537.0 282 91.5
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.2e-142 510.0 269 91.4
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 3.5e-134 481.9 282 79.8
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 5.5e-132 474.6 282 79.4
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 7.2e-132 474.2 282 81.2
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 9.4e-132 473.8 282 78.7
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 2.1e-131 472.6 284 79.6
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 3.6e-131 471.9 279 79.2
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.4e-130 469.9 282 79.1
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 6.7e-130 467.6 280 80.0
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.2e-129 466.8 280 77.5
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 6.3e-128 461.1 282 77.0
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 6.3e-128 461.1 280 78.9
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.1e-127 460.3 280 77.9
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.1e-127 460.3 277 77.6
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 3.1e-127 458.8 280 78.6
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 5.3e-127 458.0 282 75.9
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 7.0e-127 457.6 285 76.1
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 1.2e-126 456.8 278 78.4
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.6e-126 456.4 281 77.2
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.7e-126 455.7 282 77.0
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 2.7e-126 455.7 278 77.7
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 4.5e-126 454.9 281 77.6
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.0e-125 453.8 282 75.5
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.7e-125 453.0 282 76.6
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 2.2e-125 452.6 281 77.2
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 3.8e-125 451.8 281 76.5
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 5.0e-125 451.4 282 77.3
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 5.0e-125 451.4 282 77.7
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 6.5e-125 451.1 282 77.7
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 6.5e-125 451.1 282 75.9
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.5e-125 451.1 279 76.0
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 6.5e-125 451.1 277 75.8
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 6.5e-125 451.1 279 78.5
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.1e-124 450.3 279 76.0
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 1.5e-124 449.9 281 74.7
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.9e-124 449.5 279 76.0
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.9e-124 449.5 280 75.7
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.9e-124 449.5 282 75.9
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 3.2e-124 448.7 282 75.9
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 4.2e-124 448.4 282 76.6
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 7.2e-124 447.6 282 75.9
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 9.4e-124 447.2 281 76.9
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.1e-123 446.0 279 77.1
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 2.1e-123 446.0 279 77.1
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 2.1e-123 446.0 282 75.9
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 2.1e-123 446.0 281 75.1
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 2.1e-123 446.0 285 75.1
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 6.1e-123 444.5 281 74.7
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 8.0e-123 444.1 282 75.9
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 8.0e-123 444.1 268 79.9
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.4e-122 443.4 279 74.6
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.3e-122 442.6 275 77.5
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 8.8e-122 440.7 279 72.4
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.2e-121 440.3 281 74.7
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 2.6e-121 439.1 282 74.5
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.4e-121 438.7 284 75.0
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 6.3e-120 434.5 279 72.4
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 6.3e-120 434.5 280 72.5
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 6.3e-120 434.5 279 75.3
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 6.3e-120 434.5 281 74.0
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 8.3e-120 434.1 280 71.8
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 8.3e-120 434.1 282 73.8
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.1e-119 433.7 280 71.8
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.1e-119 433.7 280 71.8
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.1e-119 433.7 280 71.8
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.1e-119 433.7 280 71.8
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.1e-119 433.7 279 72.4
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 2.4e-119 432.6 285 73.3
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 3.1e-119 432.2 279 71.7
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 4.1e-119 431.8 268 77.2
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 9.1e-119 430.6 280 73.6
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.2e-118 430.3 314 66.9
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.0e-118 429.5 281 73.0
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 2.7e-118 429.1 280 73.2
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 3.5e-118 428.7 279 71.0
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 6.5e-117 424.5 280 70.0
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.9e-116 422.9 275 74.5
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 4.2e-116 421.8 284 70.8
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 5.5e-116 421.4 296 69.9
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 5.5e-116 421.4 310 67.7
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 4.7e-115 418.3 288 68.4
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.0e-114 417.2 271 74.2
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.0e-114 417.2 247 78.9
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 4.0e-114 415.2 282 70.2
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 4.0e-114 415.2 282 70.2
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.2e-113 413.7 265 75.5
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.3e-112 410.2 279 68.5
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 9.2e-111 404.1 268 71.6
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.0e-109 400.6 280 68.6
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.7e-109 399.8 263 74.5
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.9e-109 399.1 251 76.1
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 4.3e-108 395.2 280 67.5
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 5.6e-108 394.8 236 78.8
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 1.6e-102 376.7 251 69.3
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.6e-102 376.7 251 68.9
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 3.9e-101 372.1 266 67.7
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 8.6e-101 370.9 282 65.6
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 1.1e-98 364.0 264 65.9
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.7e-94 349.4 248 66.1
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.7e-93 346.7 419 47.5
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 1.8e-90 336.7 283 58.7
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.1e-90 335.9 190 81.1
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 3.4e-89 332.4 274 56.9
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 4.6e-86 322.0 404 46.5
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 4.0e-82 308.9 271 56.5
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 1.3e-80 303.9 269 58.7
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 2.3e-77 293.1 264 54.9
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 6.6e-77 291.6 167 79.6
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 1.5e-76 290.4 310 49.7
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 4.3e-76 288.9 167 79.0
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 4.7e-75 285.4 176 75.0
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 3.1e-74 282.7 143 87.4
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 2.7e-70 269.6 176 67.6
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 6.0e-70 268.5 281 47.3
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 6.4e-64 248.4 161 72.7
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 5.4e-63 245.4 297 45.5
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 2.0e-57 226.9 249 49.4
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 7.1e-55 218.4 290 42.1
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 9.3e-55 218.0 147 63.3
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 8.2e-51 204.9 135 73.3
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 2.4e-50 203.4 248 46.8
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.6e-46 190.7 141 69.5
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 4.3e-44 182.6 155 59.4
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 2.6e-41 173.3 221 41.6
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 2.8e-35 153.3 77 89.6
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 5.9e-33 145.6 111 60.4
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 7.4e-28 128.6 70 80.0
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.3e-27 127.9 72 75.0
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.3e-27 127.9 72 75.0
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.0e-20 104.0 78 67.9
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 9.7e-20 101.7 92 56.5
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 3.7e-19 99.8 80 60.0
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.4e-18 97.1 75 64.0
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.1e-18 96.7 86 59.3
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 8.5e-16 88.6 92 54.3
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.0e-13 81.6 96 45.8
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.8e-13 80.9 55 70.9
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.6e-06 57.8 156 28.2
SMO119G0520 Selaginella moellendorffii HOM05D019566 ORTHO05D017343 2.1e-06 57.4 103 33.0
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 3.6e-06 56.6 150 28.7


User provided reference genes

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