Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.8e-271 937.6 469 100.0
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 6.0e-269 930.2 469 98.9
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 7.4e-243 843.6 469 90.0
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 2.7e-237 825.1 469 89.3
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.4e-236 822.8 469 86.6
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 4.4e-235 817.8 469 86.6
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.3e-215 752.3 420 87.4
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.7e-194 682.9 468 71.6
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.4e-193 679.1 469 70.4
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.7e-192 675.6 469 69.9
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.0e-191 673.7 473 69.6
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.9e-190 669.5 469 69.7
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 2.5e-190 669.1 469 70.4
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 5.6e-190 667.9 469 69.1
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.8e-188 662.9 473 68.5
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 6.8e-188 661.0 469 69.5
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 6.4e-186 654.4 439 71.3
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 8.4e-186 654.1 471 68.4
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.1e-185 653.7 465 68.8
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 1.1e-185 653.7 468 68.8
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 4.2e-185 651.7 464 69.0
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 4.2e-185 651.7 469 67.8
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.6e-184 648.3 467 69.8
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 7.8e-184 647.5 464 68.3
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.9e-183 645.2 463 66.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 8.7e-183 644.0 440 69.8
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 2.5e-182 642.5 463 68.0
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 3.3e-182 642.1 468 66.7
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.6e-182 641.3 466 67.4
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.6e-181 639.8 463 67.4
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 2.1e-181 639.4 461 65.7
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.2e-181 637.9 467 67.2
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 4.4e-179 631.7 465 66.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.2e-178 629.4 467 66.0
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.9e-178 629.0 467 66.0
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.4e-178 627.9 467 65.7
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 2.4e-177 625.9 470 63.8
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.2e-177 625.5 467 66.0
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.2e-176 623.6 463 66.1
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.2e-176 623.6 465 64.5
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.6e-176 623.2 467 65.3
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.7e-176 622.5 465 67.3
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.0e-175 620.5 468 63.7
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.5e-174 615.9 465 64.7
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 4.3e-174 615.1 465 65.8
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 7.3e-174 614.4 463 64.6
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.6e-173 613.2 465 63.7
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.1e-172 610.5 484 63.2
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.4e-172 609.4 465 65.2
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 4.0e-172 608.6 470 63.8
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.6e-171 605.9 465 64.5
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.6e-171 605.9 468 62.0
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 3.4e-171 605.5 419 70.4
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.3e-170 603.6 469 64.6
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 3.8e-170 602.1 464 64.4
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 9.3e-169 597.4 436 65.6
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 9.3e-169 597.4 467 63.4
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 3.5e-168 595.5 465 63.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.9e-166 589.7 468 61.5
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.3e-166 588.6 462 63.0
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 9.6e-166 587.4 453 63.1
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.6e-165 586.6 468 61.5
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 6.2e-165 584.7 465 61.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.3e-164 581.6 460 60.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.5e-163 580.1 460 60.7
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.5e-163 580.1 465 60.6
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.4e-163 578.9 460 60.4
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.3e-162 577.0 460 61.1
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.9e-162 575.9 462 62.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 2.9e-162 575.9 462 61.7
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 3.8e-162 575.5 435 65.5
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.9e-161 573.2 470 60.0
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-161 572.4 462 61.5
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 4.2e-161 572.0 463 60.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-161 572.0 462 61.7
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-161 572.0 462 61.7
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 4.2e-161 572.0 464 61.6
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 7.1e-161 571.2 461 59.7
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-160 570.5 461 59.9
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.2e-160 570.5 461 61.2
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 6.0e-160 568.2 461 59.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.8e-159 566.6 469 59.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-159 566.2 461 59.4
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.6e-158 561.6 459 59.9
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 9.6e-158 560.8 460 59.8
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.1e-157 559.7 459 57.5
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.3e-156 555.1 459 58.4
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 9.0e-156 554.3 459 57.5
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-154 550.8 459 57.5
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-154 550.4 459 56.9
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.5e-153 546.2 463 59.2
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 4.6e-152 542.0 439 60.6
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 4.6e-152 542.0 459 57.5
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.9e-150 536.6 467 58.0
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 3.7e-149 532.3 431 58.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 6.3e-149 531.6 461 57.5
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 6.3e-149 531.6 439 57.6
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.2e-147 527.3 465 54.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 8.5e-146 521.2 467 56.7
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 2.5e-145 519.6 435 57.5
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 5.5e-145 518.5 484 53.9
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.3e-143 513.1 463 54.2
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 8.8e-143 511.1 441 56.5
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 8.8e-143 511.1 486 56.8
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.5e-142 510.4 437 56.3
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-141 506.9 461 55.3
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 4.8e-141 505.4 338 72.8
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 4.1e-140 502.3 489 53.4
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.9e-138 496.1 453 52.5
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-136 490.3 446 55.8
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.9e-135 485.7 508 52.0
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 8.8e-135 484.6 424 57.8
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 5.7e-134 481.9 461 52.1
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-133 479.9 461 53.8
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.4e-132 477.2 463 55.5
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 2.1e-128 463.4 361 61.8
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-127 461.1 388 57.0
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.4e-124 449.9 364 57.7
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 5.0e-122 442.2 429 54.5
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-120 436.8 447 52.6
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.2e-112 411.0 505 45.7
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 5.4e-100 369.0 470 43.0
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 7.5e-86 322.0 474 39.2
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-83 314.3 255 65.5
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 3.5e-83 313.2 427 40.0
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.4e-76 289.3 264 53.8
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 4.0e-71 273.1 200 70.0
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 1.5e-70 271.2 200 69.5
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.9e-69 266.2 201 67.7
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.4e-68 264.6 190 67.9
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 5.3e-63 246.1 226 54.4
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.6e-54 217.2 145 66.9
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 6.7e-50 202.6 384 37.2
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.5e-49 200.7 225 49.3
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-47 192.6 222 48.6
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-44 183.7 317 36.9
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 9.0e-39 165.6 156 53.8
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.9e-36 157.9 110 63.6
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.5e-30 138.3 76 77.6
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 5.9e-30 136.3 177 45.8
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 8.5e-29 132.5 132 49.2
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.2e-27 128.6 116 56.0
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.6e-27 126.7 109 61.5
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 6.7e-26 122.9 213 35.7
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 9.7e-25 119.0 90 62.2
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.8e-23 114.8 83 66.3
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-22 112.1 137 45.3
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 5.9e-22 109.8 148 45.9
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-21 107.8 145 42.8
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 5.0e-21 106.7 145 42.1
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 3.2e-20 104.0 84 63.1
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 9.4e-20 102.4 117 49.6
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 2.7e-19 100.9 98 50.0
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 7.9e-19 99.4 77 57.1
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-18 98.6 109 47.7
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-18 98.2 77 57.1
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.6e-17 94.4 54 68.5
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 7.4e-17 92.8 140 42.1
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.8e-16 90.9 55 74.5
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 3.7e-16 90.5 98 49.0
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-15 89.0 74 54.1
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 7.0e-15 86.3 119 40.3
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.9e-14 83.2 54 66.7
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.7e-14 82.8 200 28.0
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.5e-13 79.3 195 28.2
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 1.9e-12 78.2 49 71.4
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.2e-11 75.5 184 27.7
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 1.8e-10 71.6 68 48.5
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-08 64.7 186 25.3
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 6.3e-08 63.2 64 51.6
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.8e-07 61.6 94 35.1
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.0e-07 59.7 76 38.2
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 2.0e-06 58.2 64 45.3


User provided reference genes

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