Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 1.3e-100 369.8 198 100.0
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 7.3e-99 364.0 198 98.0
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 2.2e-87 325.9 204 89.7
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 3.2e-78 295.4 222 74.3
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.0e-64 249.6 159 86.2
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 4.5e-64 248.4 159 85.5
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 2.9e-55 219.2 202 64.4
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 7.9e-53 211.1 199 61.8
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 7.9e-53 211.1 202 61.4
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.8e-52 209.9 198 62.6
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.5e-51 206.1 191 63.4
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 3.3e-51 205.7 201 62.2
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 3.3e-51 205.7 196 61.7
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 4.3e-51 205.3 192 62.0
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 7.4e-51 204.5 202 60.9
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 1.3e-50 203.8 195 59.5
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.8e-50 202.6 191 62.3
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 4.8e-50 201.8 196 61.7
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 1.1e-49 200.7 199 59.8
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 2.4e-49 199.5 203 56.2
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 2.4e-49 199.5 166 66.9
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 3.1e-49 199.1 153 71.2
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 3.1e-49 199.1 133 78.9
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 4.1e-49 198.7 158 70.3
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 4.1e-49 198.7 184 63.6
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 1.2e-48 197.2 142 74.6
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.5e-48 196.8 154 71.4
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 5.9e-48 194.9 171 66.7
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 1.0e-47 194.1 197 60.9
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 1.3e-47 193.7 200 58.5
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 2.2e-47 193.0 138 74.6
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 2.9e-47 192.6 113 87.6
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 5.0e-47 191.8 188 61.7
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 6.5e-47 191.4 138 73.9
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 6.5e-47 191.4 204 59.3
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 8.5e-47 191.0 126 82.5
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 1.4e-46 190.3 180 61.1
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.9e-46 189.9 154 69.5
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 1.9e-46 189.9 182 62.1
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 2.5e-46 189.5 139 71.2
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 2.5e-46 189.5 206 60.7
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.2e-46 188.7 206 59.2
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 4.2e-46 188.7 154 68.2
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 4.2e-46 188.7 107 90.7
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.2e-46 188.0 154 68.2
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 7.2e-46 188.0 147 69.4
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.2e-45 187.2 206 58.7
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 1.2e-45 187.2 114 83.3
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.2e-45 187.2 202 57.9
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.2e-45 187.2 145 71.0
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 1.2e-45 187.2 144 72.2
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 1.6e-45 186.8 116 82.8
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 1.6e-45 186.8 107 88.8
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 1.6e-45 186.8 146 67.1
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 2.1e-45 186.4 156 69.2
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 2.1e-45 186.4 107 87.9
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 2.7e-45 186.0 143 67.8
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 2.7e-45 186.0 131 75.6
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 4.6e-45 185.3 206 58.7
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.6e-45 185.3 206 58.7
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 6.1e-45 184.9 119 83.2
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 7.9e-45 184.5 119 79.8
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 1.0e-44 184.1 107 88.8
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 1.4e-44 183.7 107 86.9
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.4e-44 183.7 153 66.0
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 2.3e-44 183.0 163 62.0
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 3.0e-44 182.6 129 72.1
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 3.0e-44 182.6 114 80.7
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 3.9e-44 182.2 211 53.1
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 3.9e-44 182.2 111 82.9
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 5.1e-44 181.8 111 83.8
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 8.8e-44 181.0 187 59.9
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 1.1e-43 180.6 131 72.5
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 2.5e-43 179.5 116 78.4
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 2.5e-43 179.5 117 82.1
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 3.3e-43 179.1 133 71.4
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 3.3e-43 179.1 130 75.4
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 5.7e-43 178.3 194 56.7
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 9.7e-43 177.6 133 68.4
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 9.7e-43 177.6 162 60.5
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.3e-42 177.2 138 73.9
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 1.7e-42 176.8 147 63.9
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 2.2e-42 176.4 142 67.6
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 3.7e-42 175.6 119 76.5
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 6.3e-42 174.9 108 79.6
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 6.3e-42 174.9 108 79.6
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 6.3e-42 174.9 108 79.6
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 6.3e-42 174.9 108 79.6
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 6.3e-42 174.9 144 70.8
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 1.1e-41 174.1 136 69.1
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 1.4e-41 173.7 107 80.4
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 1.4e-41 173.7 107 80.4
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 1.8e-41 173.3 128 71.1
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 2.4e-41 172.9 107 79.4
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 2.4e-41 172.9 129 69.0
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 5.3e-41 171.8 110 80.9
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 1.0e-39 167.5 122 70.5
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 2.9e-39 166.0 122 68.9
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 1.1e-38 164.1 113 74.3
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 4.7e-37 158.7 191 53.9
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.0e-35 153.3 123 65.0
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.0e-35 153.3 110 69.1
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 2.0e-35 153.3 133 60.2
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 2.6e-35 152.9 117 66.7
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 2.6e-35 152.9 130 60.8
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 1.0e-31 141.0 199 49.7
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 3.8e-31 139.0 89 83.1
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 1.5e-30 137.1 118 56.8
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 1.5e-27 127.1 86 76.7
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 1.5e-27 127.1 86 76.7
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 2.7e-24 116.3 127 49.6
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 8.8e-20 101.3 80 71.2
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 7.5e-19 98.2 155 46.5
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 3.7e-18 95.9 123 43.9
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 2.2e-15 86.7 104 45.2


User provided reference genes

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