Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 5.4e-95 350.9 168 100.0
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 3.5e-94 348.2 168 99.4
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.3e-91 339.7 168 95.8
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 2.0e-81 305.8 168 86.9
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.9e-79 299.3 169 85.2
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.9e-79 299.3 169 85.2
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 2.3e-77 292.4 168 82.7
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 3.8e-56 221.9 167 61.7
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 8.5e-56 220.7 168 61.3
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 1.9e-55 219.5 170 61.2
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 60.1
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 60.1
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.7e-54 215.7 168 60.1
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 3.6e-54 215.3 167 59.9
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 3.6e-54 215.3 167 59.9
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 4.6e-54 214.9 168 57.1
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.6e-54 214.9 168 57.1
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 4.6e-54 214.9 170 60.0
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 7.9e-54 214.2 168 58.3
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.9e-54 214.2 168 57.1
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 7.9e-54 214.2 169 62.1
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 7.9e-54 214.2 168 58.3
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 1.0e-53 213.8 168 60.7
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 1.0e-53 213.8 168 58.9
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.0e-53 213.8 168 57.1
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.4e-53 213.4 170 60.0
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.4e-53 213.4 168 58.3
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.8e-53 213.0 168 60.1
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 2.3e-53 212.6 168 58.3
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 8.8e-53 210.7 168 57.1
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 57.1
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 56.5
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.0e-52 209.5 168 58.3
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 2.5e-52 209.1 168 57.1
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 2.5e-52 209.1 168 56.0
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 5.7e-52 208.0 168 58.9
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.3e-51 206.8 168 56.0
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.8e-51 205.7 168 58.3
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.8e-51 205.7 168 58.3
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 2.8e-51 205.7 168 55.4
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 4.8e-51 204.9 168 57.7
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 6.3e-51 204.5 168 57.7
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 6.3e-51 204.5 168 57.7
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 6.3e-51 204.5 168 57.7
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 6.3e-51 204.5 168 57.1
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 8.2e-51 204.1 168 57.7
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.1e-50 203.8 168 57.7
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 1.8e-50 203.0 163 55.8
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 4.1e-50 201.8 168 57.7
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 4.1e-50 201.8 205 52.2
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 6.9e-50 201.1 168 54.2
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.2e-49 200.3 168 56.0
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 2.0e-49 199.5 168 56.5
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.4e-49 198.7 168 55.4
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 4.5e-49 198.4 170 51.8
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 5.9e-49 198.0 168 56.5
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 5.9e-49 198.0 168 54.8
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 7.7e-49 197.6 170 52.9
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.0e-48 197.2 168 54.2
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 1.0e-48 197.2 168 56.0
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.0e-48 197.2 168 53.6
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.3e-48 196.8 170 51.2
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.7e-48 196.4 168 57.7
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.7e-48 196.4 168 57.7
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.7e-48 196.4 168 54.2
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 2.2e-48 196.1 168 55.4
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 2.2e-48 196.1 168 57.7
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 3.8e-48 195.3 168 56.0
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 5.0e-48 194.9 168 54.2
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 8.5e-48 194.1 173 55.5
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 8.5e-48 194.1 169 57.4
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 8.5e-48 194.1 168 54.8
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 8.5e-48 194.1 153 59.5
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.1e-47 193.7 168 54.2
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 1.1e-47 193.7 169 57.4
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.1e-47 193.7 168 55.4
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.4e-47 193.4 168 54.2
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.4e-47 193.4 172 52.9
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 2.5e-47 192.6 169 56.2
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 5.5e-47 191.4 169 55.6
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-46 190.3 168 53.0
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.6e-46 189.9 168 53.0
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 2.1e-46 189.5 172 51.2
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 2.1e-46 189.5 168 53.0
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 2.7e-46 189.1 179 52.0
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 2.3e-45 186.0 170 51.8
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 3.9e-45 185.3 168 52.4
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 3.9e-45 185.3 168 51.8
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 5.1e-45 184.9 168 51.8
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 1.1e-44 183.7 168 51.8
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 1.1e-44 183.7 168 51.8
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.0e-44 183.0 168 51.8
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.0e-44 183.0 168 51.8
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 2.0e-44 183.0 168 51.8
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 3.3e-44 182.2 168 50.6
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 3.3e-44 182.2 168 51.2
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 5.7e-44 181.4 184 51.6
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.2e-43 179.5 201 44.3
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.8e-42 176.4 141 58.9
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 5.3e-42 174.9 237 44.3
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 7.0e-42 174.5 165 47.9
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.2e-41 173.7 168 49.4
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 5.9e-41 171.4 181 45.3
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 7.7e-41 171.0 167 47.3
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 7.7e-41 171.0 165 46.7
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.0e-40 170.6 153 49.7
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 2.2e-40 169.5 205 45.9
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.9e-39 166.4 168 44.6
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 3.2e-39 165.6 166 45.8
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 9.4e-39 164.1 140 56.4
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.6e-38 163.3 136 54.4
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 2.3e-37 159.5 169 46.7
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 4.0e-37 158.7 190 43.2
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 5.2e-37 158.3 193 43.5
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 4.4e-36 155.2 190 41.6
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.4e-36 155.2 125 52.8
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 1.1e-34 150.6 168 45.8
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 5.9e-33 144.8 167 46.1
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.9e-31 139.8 151 49.7
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 3.2e-31 139.0 109 58.7
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 9.4e-31 137.5 168 43.5
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 6.1e-30 134.8 174 42.0
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 1.8e-29 133.3 169 38.5
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.8e-29 133.3 125 55.2
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 2.3e-29 132.9 186 40.3
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 4.0e-29 132.1 169 40.8
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 6.8e-29 131.3 145 41.4
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 5.7e-28 128.3 104 53.8
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 6.3e-27 124.8 173 37.6
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 1.5e-23 113.6 168 38.1
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 8.0e-22 107.8 97 52.6
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 8.8e-21 104.4 55 81.8
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 3.4e-20 102.4 157 38.2
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 4.4e-20 102.1 87 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.0e-17 93.2 142 34.5
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 7.7e-17 91.3 169 29.0
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.7e-16 90.1 171 33.9
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 2.9e-16 89.4 169 29.6
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.2e-14 84.0 103 38.8
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 3.6e-14 82.4 86 51.2
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 3.6e-14 82.4 110 38.2
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 5.2e-13 78.6 99 39.4
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 5.2e-13 78.6 131 33.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.5e-12 74.7 175 28.0
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 1.0e-08 64.3 67 43.3


User provided reference genes

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