Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 4.5e-118 427.9 217 100.0
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 8.0e-115 417.2 218 97.7
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 5.3e-111 404.4 216 95.4
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 2.6e-81 305.8 184 86.4
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 1.1e-79 300.4 181 84.0
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 1.6e-67 260.0 209 64.1
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 1.1e-66 257.3 175 73.7
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 1.8e-66 256.5 176 75.0
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 4.4e-65 251.9 169 69.8
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 8.4e-64 247.7 179 72.1
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 3.2e-63 245.7 180 71.1
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 2.1e-62 243.0 174 67.8
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.1e-62 243.0 167 68.3
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 3.5e-62 242.3 168 69.0
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 3.5e-62 242.3 174 67.8
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 7.8e-62 241.1 174 67.8
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 7.8e-62 241.1 177 65.5
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.7e-61 240.0 174 67.2
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 3.0e-61 239.2 173 68.8
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 3.0e-61 239.2 172 66.3
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 6.6e-61 238.0 172 66.9
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 1.1e-60 237.3 168 67.3
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 1.5e-60 236.9 191 63.4
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 3.3e-60 235.7 173 66.5
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 5.6e-60 235.0 182 65.9
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 7.3e-60 234.6 161 70.2
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 7.3e-60 234.6 157 72.6
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 7.3e-60 234.6 157 72.6
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 9.6e-60 234.2 176 68.8
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 9.6e-60 234.2 174 67.2
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 1.2e-59 233.8 174 66.1
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 2.1e-59 233.0 173 67.1
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 2.1e-59 233.0 176 68.8
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 2.8e-59 232.6 205 56.1
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 4.7e-59 231.9 173 67.1
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 8.1e-59 231.1 161 67.7
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 1.4e-58 230.3 161 70.2
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 1.4e-58 230.3 158 71.5
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 1.4e-58 230.3 175 64.0
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 2.4e-58 229.6 181 67.4
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 8.9e-58 227.6 170 64.7
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 8.9e-58 227.6 184 63.6
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 8.9e-58 227.6 172 63.4
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 1.5e-57 226.9 175 62.9
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 1.5e-57 226.9 184 63.0
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.0e-57 226.5 184 65.2
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 2.0e-57 226.5 173 64.7
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 2.0e-57 226.5 168 67.3
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 2.0e-57 226.5 173 66.5
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 2.0e-57 226.5 170 64.7
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 2.6e-57 226.1 190 60.0
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 2.6e-57 226.1 177 62.7
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 5.8e-57 224.9 166 66.9
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 5.8e-57 224.9 178 65.2
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 5.8e-57 224.9 178 68.0
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 7.6e-57 224.6 175 67.4
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 9.9e-57 224.2 187 62.6
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 1.7e-56 223.4 178 64.6
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 3.8e-56 222.2 178 64.0
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 3.8e-56 222.2 179 67.6
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 4.2e-55 218.8 175 61.7
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 9.3e-55 217.6 170 64.7
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 9.3e-55 217.6 172 63.4
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 1.2e-54 217.2 173 64.7
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 2.1e-54 216.5 164 64.6
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 2.7e-54 216.1 178 61.8
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 6.0e-54 214.9 198 62.1
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 7.8e-54 214.5 172 64.0
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 1.0e-53 214.2 179 60.3
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 2.3e-53 213.0 165 61.2
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 3.0e-53 212.6 170 63.5
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 3.0e-53 212.6 167 62.3
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 5.1e-53 211.8 165 61.2
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 5.1e-53 211.8 165 61.2
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 5.1e-53 211.8 173 59.0
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 1.1e-52 210.7 165 60.6
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 1.1e-52 210.7 165 60.6
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 1.5e-52 210.3 165 60.6
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 1.5e-52 210.3 165 60.6
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 1.9e-52 209.9 137 75.9
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 2.5e-52 209.5 173 57.8
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 2.5e-52 209.5 165 60.0
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 4.3e-52 208.8 134 72.4
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 7.3e-52 208.0 165 60.0
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 1.3e-51 207.2 167 59.9
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 1.3e-51 207.2 178 60.1
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 1.6e-51 206.8 143 72.7
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 1.1e-50 204.1 174 60.3
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 5.4e-47 191.8 236 44.9
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 9.3e-47 191.0 129 71.3
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 4.6e-46 188.7 127 70.1
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 1.3e-45 187.2 134 66.4
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 5.6e-44 181.8 127 67.7
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 1.4e-39 167.2 183 49.7
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 2.7e-38 162.9 172 53.5
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 3.3e-36 156.0 108 71.3
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 7.4e-36 154.8 160 56.2
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.4e-34 149.8 147 51.0
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 5.3e-34 148.7 168 52.4
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 1.8e-26 123.6 169 42.6
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 3.1e-26 122.9 90 66.7
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 9.0e-26 121.3 83 67.5
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 7.9e-22 108.2 75 65.3
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 5.1e-21 105.5 108 50.0
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.3e-19 100.9 168 41.7
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 3.7e-19 99.4 112 47.3
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 1.1e-18 97.8 176 34.7
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 9.1e-18 94.7 138 38.4
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 2.6e-17 93.2 63 68.3
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 3.6e-14 82.8 65 63.1
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 1.1e-07 61.2 79 38.0
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 2.5e-07 60.1 40 72.5
SHI07962 Sapria himalayana HOM05D007018 ORTHO05D008887 7.9e-06 55.1 36 66.7


User provided reference genes

Program Settings