Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 2.0e-161 572.4 295 100.0
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.5e-160 567.0 295 99.0
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.9e-137 491.1 276 90.6
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 9.7e-132 473.8 296 81.4
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 9.1e-122 440.7 298 77.5
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.7e-67 260.4 286 51.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 8.4e-67 258.1 297 52.2
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 2.4e-66 256.5 262 56.5
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.3e-62 244.2 297 46.8
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.3e-62 244.2 288 50.0
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 3.7e-62 242.7 277 49.5
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.2e-57 227.6 261 47.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.9e-50 203.8 295 39.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.5e-50 202.2 279 45.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.5e-50 202.2 277 44.8
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.9e-45 185.3 299 41.5
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.0e-40 169.9 300 37.7
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.0e-40 169.9 267 41.9
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.8e-38 163.3 279 37.6
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 8.2e-38 161.8 300 38.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.2e-35 153.7 297 37.0
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.9e-35 153.3 299 38.1
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 2.5e-34 150.2 253 38.7
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 4.2e-34 149.4 290 38.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 9.4e-34 148.3 299 38.5
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 6.1e-33 145.6 298 37.9
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 7.9e-33 145.2 279 36.9
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 6.7e-32 142.1 287 36.2
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-31 141.4 263 37.6
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 5.7e-31 139.0 284 35.2
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.3e-30 137.9 293 36.5
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-30 137.9 264 37.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.8e-29 134.0 266 37.2
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.8e-29 134.0 266 36.5
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.4e-29 133.7 262 37.8
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 9.1e-29 131.7 280 36.1
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 2.6e-28 130.2 276 37.3
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.5e-28 129.8 284 34.9
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 7.7e-28 128.6 277 35.0
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 7.7e-28 128.6 296 33.8
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 2.2e-27 127.1 299 33.8
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 2.9e-27 126.7 269 35.7
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 5.0e-27 125.9 296 32.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 6.5e-27 125.6 263 32.7
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 6.5e-27 125.6 276 34.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 8.5e-27 125.2 277 32.9
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.1e-26 124.8 281 35.2
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.5e-26 124.4 266 35.7
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 3.2e-26 123.2 295 31.9
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 3.2e-26 123.2 268 35.1
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.2e-26 123.2 297 36.4
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.2e-26 123.2 263 35.7
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 5.5e-26 122.5 271 36.5
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.5e-26 122.5 286 32.9
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.4e-26 121.7 264 34.8
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.2e-25 121.3 266 35.3
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 2.1e-25 120.6 291 33.3
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 3.6e-25 119.8 277 34.3
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.6e-25 119.8 270 34.4
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 6.1e-25 119.0 278 32.7
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 6.1e-25 119.0 281 32.7
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 8.0e-25 118.6 262 35.5
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.0e-24 118.2 302 31.5
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.4e-24 117.9 282 33.7
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.4e-24 117.9 277 33.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.4e-24 117.9 277 33.6
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.8e-24 117.5 264 33.7
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.3e-24 117.1 273 35.2
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.6e-23 113.6 271 35.4
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.3e-23 113.2 253 34.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 4.4e-23 112.8 268 33.6
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 4.4e-23 112.8 283 32.5
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.4e-23 112.1 282 33.0
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.4e-23 112.1 285 35.4
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.7e-23 111.7 273 34.1
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 9.7e-23 111.7 302 30.8
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.7e-22 110.9 265 34.7
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.2e-22 110.5 278 33.8
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.2e-22 110.5 122 48.4
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.8e-22 110.2 264 33.3
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.1e-21 108.2 261 33.0
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-21 108.2 278 34.2
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.4e-21 107.8 117 51.3
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.4e-21 107.8 274 30.7
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.4e-21 107.1 284 33.1
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.1e-21 106.7 270 34.4
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 5.3e-21 105.9 93 60.2
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 9.1e-21 105.1 290 32.4
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 9.1e-21 105.1 268 32.1
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.6e-20 104.4 244 34.4
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.8e-19 99.8 276 33.0
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 5.0e-19 99.4 279 30.8
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 5.0e-19 99.4 253 29.6
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 8.5e-19 98.6 124 48.4
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.1e-18 98.2 284 32.7
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 5.5e-18 95.9 258 31.8
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 7.2e-18 95.5 268 30.6
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.2e-17 94.7 256 32.0
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.1e-17 94.0 221 33.9
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.1e-17 94.0 261 33.7
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.0e-16 91.7 263 29.7
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.8e-16 90.9 266 30.1
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.3e-16 90.5 266 30.1
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.8e-16 89.0 269 27.9
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.5e-15 87.8 282 28.7
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.0e-15 87.4 254 28.7
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.4e-15 86.7 152 37.5
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 5.7e-15 85.9 258 29.5
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 5.7e-15 85.9 182 35.7
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 7.5e-15 85.5 281 28.8
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 7.5e-15 85.5 285 29.8
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.7e-15 85.1 262 31.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 9.7e-15 85.1 220 30.0
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 9.7e-15 85.1 280 29.3
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.3e-14 84.7 264 27.7
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.3e-14 84.7 69 63.8
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-13 81.6 266 29.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.1e-13 81.6 269 31.2
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.4e-13 81.3 115 44.3
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 2.4e-13 80.5 252 31.3
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 2.4e-13 80.5 225 35.1
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-12 78.2 207 32.4
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 4.5e-12 76.3 125 38.4
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.9e-12 75.9 77 50.6
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 7.7e-12 75.5 275 26.2
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 7.7e-12 75.5 72 54.2
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.3e-11 74.7 102 43.1
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.3e-11 74.7 66 56.1
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.3e-11 74.7 67 56.7
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.7e-11 74.3 129 38.8
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 2.9e-11 73.6 67 52.2
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.9e-11 73.6 258 28.3
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.8e-11 73.2 67 52.2
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 5.0e-11 72.8 105 41.0
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 8.5e-11 72.0 67 50.7
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-10 71.6 66 56.1
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-10 71.6 66 56.1
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.1e-10 71.6 66 56.1
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.2e-10 69.7 244 28.7
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 4.2e-10 69.7 111 40.5
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-10 69.7 111 40.5
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-10 69.7 111 40.5
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 5.5e-10 69.3 273 27.8
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 7.2e-10 68.9 220 31.8
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 7.2e-10 68.9 156 34.0
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 9.4e-10 68.6 66 53.0
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.2e-09 68.2 91 44.0
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.6e-09 67.8 251 29.5
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.6e-09 67.8 224 33.5
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 2.7e-09 67.0 252 31.0
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.7e-09 67.0 272 25.4
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 2.7e-09 67.0 63 57.1
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.6e-09 66.6 63 57.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.6e-09 66.6 96 40.6
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 3.6e-09 66.6 174 32.2
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.6e-09 66.6 286 26.9
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 4.7e-09 66.2 140 32.1
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 4.7e-09 66.2 128 36.7
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 6.1e-09 65.9 74 50.0
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 8.0e-09 65.5 141 38.3
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.8e-08 64.3 63 55.6
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.3e-08 63.9 119 34.5
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 6.8e-08 62.4 67 47.8
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 6.8e-08 62.4 60 51.7
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 8.8e-08 62.0 63 50.8
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 8.8e-08 62.0 198 31.3
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.2e-07 61.6 69 44.9
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.0e-07 60.8 161 28.6
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.0e-07 60.8 106 42.5
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 2.0e-07 60.8 136 33.1
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.6e-07 60.5 56 55.4
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 3.7e-06 56.6 186 29.0
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 8.3e-06 55.5 212 27.8


User provided reference genes

Program Settings