Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 8.2e-112 407.1 215 100.0
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 1.3e-106 389.8 212 97.6
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 1.5e-97 359.8 213 91.1
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 1.7e-88 329.7 213 84.5
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 4.1e-79 298.5 212 78.3
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 4.7e-51 205.3 215 58.6
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 1.4e-50 203.8 105 99.0
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 4.0e-50 202.2 219 57.5
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 5.2e-50 201.8 215 60.0
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 3.4e-49 199.1 214 57.9
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 4.4e-49 198.7 215 58.6
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 9.8e-49 197.6 212 59.0
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 6.4e-48 194.9 211 55.9
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 3.2e-47 192.6 216 56.9
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 1.2e-46 190.7 210 57.6
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 2.0e-46 189.9 220 55.0
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 4.6e-46 188.7 222 54.5
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 6.0e-46 188.3 222 57.7
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 2.3e-45 186.4 225 56.9
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 3.0e-45 186.0 218 59.6
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 3.9e-45 185.7 218 55.0
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.5e-44 183.7 220 57.3
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.5e-44 183.0 216 54.2
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.1e-43 179.9 215 58.1
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 2.1e-43 179.9 228 54.4
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 2.8e-43 179.5 216 52.8
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 4.7e-43 178.7 212 56.1
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 3.1e-42 176.0 215 53.0
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 5.2e-42 175.3 217 52.1
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 6.8e-42 174.9 210 51.9
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 1.2e-41 174.1 221 52.9
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.5e-41 173.7 212 54.7
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 2.6e-41 172.9 211 53.6
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 3.4e-41 172.6 204 57.4
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 5.8e-41 171.8 216 52.8
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 5.8e-41 171.8 217 54.8
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 4.9e-40 168.7 217 49.8
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 1.1e-39 167.5 219 53.0
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 2.4e-39 166.4 211 51.2
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 2.4e-39 166.4 215 54.4
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 4.1e-39 165.6 218 52.8
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 4.1e-39 165.6 220 52.7
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 4.1e-39 165.6 214 53.7
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 9.2e-39 164.5 214 52.3
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 2.1e-38 163.3 228 50.9
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 2.7e-38 162.9 219 51.1
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.7e-37 160.2 229 52.0
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 3.0e-37 159.5 214 52.3
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 3.9e-37 159.1 214 51.9
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 1.9e-36 156.8 221 48.9
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 9.5e-36 154.5 211 50.7
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.2e-35 154.1 214 48.1
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 1.2e-35 154.1 217 51.2
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 2.8e-35 152.9 220 47.7
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 3.6e-35 152.5 218 50.5
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 6.2e-35 151.8 200 53.0
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 8.1e-35 151.4 214 47.7
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 8.1e-35 151.4 218 46.3
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 2.3e-34 149.8 220 47.7
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 8.9e-34 147.9 216 49.5
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 8.9e-34 147.9 216 50.0
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.0e-33 146.7 213 51.2
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.6e-33 146.4 222 50.9
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.6e-33 146.4 222 50.9
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 2.6e-33 146.4 222 50.9
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 5.8e-33 145.2 212 51.4
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 5.8e-33 145.2 212 48.6
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 5.8e-33 145.2 215 49.8
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 7.6e-33 144.8 222 48.6
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 4.9e-32 142.1 227 52.0
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 8.4e-32 141.4 216 48.1
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 7.1e-31 138.3 227 45.8
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 9.2e-31 137.9 215 44.7
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 4.6e-30 135.6 207 48.3
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 1.7e-29 133.7 152 57.2
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 3.0e-29 132.9 217 49.3
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 5.1e-29 132.1 218 45.4
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 5.1e-29 132.1 186 50.0
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 5.1e-29 132.1 216 47.7
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 8.6e-29 131.3 220 47.7
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 1.1e-28 131.0 206 47.1
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 1.9e-28 130.2 214 43.0
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 2.5e-28 129.8 220 44.5
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 2.5e-28 129.8 219 45.7
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 9.6e-28 127.9 216 43.5
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 9.6e-28 127.9 216 43.5
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 9.6e-28 127.9 194 47.9
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 1.6e-27 127.1 215 43.3
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 2.8e-27 126.3 225 41.8
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 2.8e-27 126.3 216 43.1
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 2.8e-27 126.3 173 52.6
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 6.2e-27 125.2 216 42.6
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 8.1e-27 124.8 221 46.6
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 1.1e-26 124.4 212 45.8
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 1.1e-26 124.4 217 43.3
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 1.1e-26 124.4 216 42.6
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.1e-26 124.4 212 44.3
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.8e-26 123.6 213 45.5
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.8e-26 123.6 224 46.0
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 5.2e-26 122.1 189 47.6
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 5.2e-26 122.1 185 44.9
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 6.9e-26 121.7 225 42.7
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 1.5e-25 120.6 220 42.3
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 1.5e-25 120.6 216 42.1
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 2.0e-25 120.2 226 45.1
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.7e-24 117.1 212 41.5
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 4.9e-24 115.5 249 41.4
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 6.4e-24 115.2 222 42.8
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 1.9e-23 113.6 234 43.6
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 1.9e-23 113.6 233 40.3
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 9.3e-23 111.3 190 44.7
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 6.0e-22 108.6 183 45.9
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 6.0e-22 108.6 183 45.9
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 1.3e-21 107.5 224 40.2
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 5.6e-20 102.1 120 54.2
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 2.1e-14 83.6 225 38.7
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 2.7e-14 83.2 184 39.1
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 7.9e-14 81.6 170 36.5
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 3.9e-13 79.3 81 55.6
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 5.6e-12 75.5 149 39.6
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 1.6e-11 73.9 186 38.2
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 1.6e-11 73.9 186 38.2
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 1.6e-11 73.9 186 38.2
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 3.6e-11 72.8 212 33.0
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 8.1e-11 71.6 140 42.1
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 8.1e-11 71.6 140 42.1
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 1.4e-10 70.9 140 42.1
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 1.4e-10 70.9 140 42.1
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 1.8e-10 70.5 193 33.2
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.4e-10 70.1 136 36.8
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 2.0e-09 67.0 179 36.9
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 2.0e-09 67.0 96 45.8
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 1.9e-07 60.5 121 44.6
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 7.1e-07 58.5 72 50.0
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 7.1e-07 58.5 72 50.0
ECA238G3056 Erigeron canadensis HOM05D002204 ORTHO05D002875 1.6e-06 57.4 105 41.9
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 7.9e-06 55.1 213 36.2


User provided reference genes

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