Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g035780 Solanum pennellii HOM05D002849 ORTHO05D009472 6.3e-52 207.2 109 100.0
PGSC0003DMG400009966 Solanum tuberosum HOM05D002849 ORTHO05D009472 8.0e-47 190.3 112 92.0
Nitab4.5_0000588g0290 Nicotiana tabacum HOM05D002849 ORTHO05D009472 7.7e-42 173.7 112 84.8
CAN.G311.94 Capsicum annuum HOM05D002849 ORTHO05D009472 2.2e-41 172.2 113 82.3
Peaxi162Scf00174g01410 Petunia axillaris HOM05D002849 ORTHO05D009472 8.0e-39 163.7 108 81.5
Nitab4.5_0003149g0010 Nicotiana tabacum HOM05D002849 ORTHO05D009472 1.2e-37 159.8 112 76.8
Nitab4.5_0000699g0200 Nicotiana tabacum HOM05D002849 ORTHO05D009472 7.5e-37 157.1 112 75.0
Solyc12g094480.3 Solanum lycopersicum HOM05D002849 ORTHO05D009472 6.3e-36 154.1 107 74.8
Sopen12g031370 Solanum pennellii HOM05D002849 ORTHO05D009472 6.3e-36 154.1 107 74.8
vmacro04390 Vaccinium macrocarpon HOM05D002849 ORTHO05D009472 1.8e-35 152.5 109 73.4
PGSC0003DMG400029324 Solanum tuberosum HOM05D002849 ORTHO05D009472 2.4e-35 152.1 107 73.8
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 1.2e-34 149.8 110 74.5
Rhsim07G0252900 Rhododendron simsii HOM05D002849 ORTHO05D009472 3.5e-34 148.3 110 73.6
MD08G1004900 Malus domestica HOM05D002849 ORTHO05D009472 6.5e-33 144.1 109 69.7
RcHm_v2.0_Chr6g0303941 Rosa chinensis HOM05D002849 ORTHO05D009472 6.5e-33 144.1 109 70.6
TAR381G0186 Trochodendron aralioides HOM05D002849 ORTHO05D009472 4.2e-32 141.4 102 73.5
CSS0028449 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D009472 7.2e-32 140.6 103 70.9
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 7.2e-32 140.6 109 68.8
Ciclev10002910m.g Citrus clementina HOM05D002849 ORTHO05D009472 1.2e-31 139.8 104 71.2
SGA_v2.0_scaffold275G46557 Striga asiatica HOM05D002849 ORTHO05D009472 2.7e-31 138.7 108 70.4
ClCG05G015240 Citrullus lanatus HOM05D002849 ORTHO05D009472 1.0e-30 136.7 109 67.0
Cc10_g00900 Coffea canephora HOM05D002849 ORTHO05D009472 1.0e-30 136.7 107 68.2
Prupe.1G357000 Prunus persica HOM05D002849 ORTHO05D009472 1.0e-30 136.7 109 68.8
QL02p013572 Quercus lobata HOM05D002849 ORTHO05D009472 1.8e-30 136.0 109 67.9
CsaV3_4G037080 Cucumis sativus L. HOM05D002849 ORTHO05D009472 2.3e-30 135.6 109 67.9
Duzib093G0992 Durio zibethinus HOM05D002849 ORTHO05D009472 2.3e-30 135.6 109 65.1
Gohir.A06G000700 Gossypium hirsutum HOM05D002849 ORTHO05D009472 5.2e-30 134.4 109 64.2
Gorai.010G000900 Gossypium raimondii HOM05D002849 ORTHO05D009472 6.8e-30 134.0 109 64.2
Migut.C00918 Erythranthe guttata HOM05D002849 ORTHO05D009472 1.5e-29 132.9 110 66.4
Sed0019383 Sechium edule HOM05D002849 ORTHO05D009472 2.0e-29 132.5 108 64.8
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 2.0e-29 132.5 109 64.2
TWI36G1301 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 2.6e-29 132.1 109 66.1
TWI56G1224 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 2.6e-29 132.1 109 65.1
Thecc.08G055000 Theobroma cacao HOM05D002849 ORTHO05D009472 4.4e-29 131.3 105 64.8
Actinidia37963 Actinidia chinensis HOM05D002849 ORTHO05D009472 5.7e-29 131.0 85 80.0
CiPaw.08G071000 Carya illinoinensis HOM05D002849 ORTHO05D009472 7.5e-29 130.6 109 62.4
COL.COLO4_21616 Corchorus olitorius HOM05D002849 ORTHO05D009472 7.5e-29 130.6 109 64.2
CANSAT80G0154 Cannabis sativa HOM05D002849 ORTHO05D009472 2.8e-28 128.6 103 65.0
CANSAT80G2323 Cannabis sativa HOM05D002849 ORTHO05D009472 2.8e-28 128.6 103 65.0
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 2.8e-28 128.6 107 65.4
MELO3C017006.2 Cucumis melo HOM05D002849 ORTHO05D009472 2.8e-28 128.6 109 64.2
DCAR_016751 Daucus carota HOM05D002849 ORTHO05D009472 3.7e-28 128.3 102 63.7
Actinidia29779 Actinidia chinensis HOM05D002849 ORTHO05D009472 4.8e-28 127.9 81 80.2
FAN20G1236 Fragaria x ananassa HOM05D002849 ORTHO05D009472 4.8e-28 127.9 109 66.1
Lsat_1_v5_gn_8_28281 Lactuca sativa HOM05D002849 ORTHO05D009472 4.8e-28 127.9 108 65.7
MD11G1257900 Malus domestica HOM05D002849 ORTHO05D009472 1.1e-27 126.7 109 62.4
HanXRQChr08g0215861 Helianthus annuus HOM05D002849 ORTHO05D009472 2.4e-27 125.6 103 65.0
Cfa014031 Carpinus fangiana HOM05D002849 ORTHO05D009472 5.4e-27 124.4 101 64.4
ECA233G1055 Erigeron canadensis HOM05D002849 ORTHO05D009472 5.4e-27 124.4 102 65.7
Nn5g27128 Nelumbo nucifera HOM05D002849 ORTHO05D009472 7.0e-27 124.0 102 66.7
HanXRQChr08g0215951 Helianthus annuus HOM05D002849 ORTHO05D009472 1.2e-26 123.2 103 64.1
Potri.002G013601 Populus trichocarpa HOM05D002849 ORTHO05D009472 2.0e-26 122.5 100 64.0
Lj1g0005069 Lotus japonicus HOM05D002849 ORTHO05D009472 2.7e-26 122.1 110 61.8
Aqoxy5G01064 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 4.5e-26 121.3 101 62.4
Aqoxy5G01070 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 5.9e-26 120.9 101 62.4
Glyma.06G019700 Glycine max HOM05D002849 ORTHO05D009472 5.9e-26 120.9 103 62.1
unitig_82.g27114 Utricularia gibba HOM05D002849 ORTHO05D009472 5.9e-26 120.9 112 61.6
EL10Ac2g02687 Beta vulgaris HOM05D002849 ORTHO05D009472 7.7e-26 120.6 110 60.0
Manes.05G140800 Manihot esculenta HOM05D002849 ORTHO05D009472 7.7e-26 120.6 99 63.6
AUR62013835 Chenopodium quinoa HOM05D002849 ORTHO05D009472 1.0e-25 120.2 110 61.8
AUR62036770 Chenopodium quinoa HOM05D002849 ORTHO05D009472 1.3e-25 119.8 110 61.8
VMungo1309G2595 Vigna mungo HOM05D002849 ORTHO05D009472 3.8e-25 118.2 103 60.2
Sc26g0004580 Simmondsia chinensis HOM05D002849 ORTHO05D009472 5.0e-25 117.9 93 67.7
Ah.00g000480 Amaranthus hybridus HOM05D002849 ORTHO05D009472 8.6e-25 117.1 105 57.1
Ca_15446_v3 Cicer arietinum L. HOM05D002849 ORTHO05D009472 8.6e-25 117.1 107 57.9
Medtr3g115060 Medicago truncatula HOM05D002849 ORTHO05D009472 8.6e-25 117.1 98 63.3
Lalb_Chr11g0061731 Lupinus albus HOM05D002849 ORTHO05D009472 1.1e-24 116.7 99 59.6
Sabra02G0010600 Salix brachista HOM05D002849 ORTHO05D009472 1.1e-24 116.7 100 61.0
SalBow7G2120 Salvia bowleyana HOM05D002849 ORTHO05D009472 2.5e-24 115.5 110 55.5
arahy.Tifrunner.gnm1.ann1.501GHP Arachis hypogaea HOM05D002849 ORTHO05D009472 3.3e-24 115.2 91 64.8
Eucgr.H01281 Eucalyptus grandis HOM05D002849 ORTHO05D009472 7.2e-24 114.0 109 59.6
Atru.chr13.177 Acer truncatum HOM05D002849 ORTHO05D009472 9.5e-24 113.6 110 60.0
Glyma.04G019400 Glycine max HOM05D002849 ORTHO05D009472 1.2e-23 113.2 103 58.3
TPR.G38106 Trifolium pratense HOM05D002849 ORTHO05D009472 1.2e-23 113.2 102 58.8
Phvul.009G021100 Phaseolus vulgaris HOM05D002849 ORTHO05D009472 2.1e-23 112.5 103 57.3
AL1G33360 Arabidopsis lyrata HOM05D002849 ORTHO05D009472 2.8e-23 112.1 87 65.5
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 2.8e-23 112.1 109 56.9
PGR102G2189 Punica granatum HOM05D002849 ORTHO05D009472 2.8e-23 112.1 100 57.0
Psat5g010840 Pisum sativum HOM05D002849 ORTHO05D009472 4.7e-23 111.3 101 57.4
CARHR020890 Cardamine hirsuta HOM05D002849 ORTHO05D009472 6.1e-23 110.9 87 64.4
Sp1g18150 Schrenkiella parvula HOM05D002849 ORTHO05D009472 1.8e-22 109.4 87 63.2
Carub.0005s0958 Capsella rubella HOM05D002849 ORTHO05D009472 5.2e-22 107.8 87 62.1
AT1G20430 Arabidopsis thaliana HOM05D002849 ORTHO05D009472 2.0e-21 105.9 87 62.1
Thhalv10009140m.g Eutrema salsugineum HOM05D002849 ORTHO05D009472 2.0e-21 105.9 87 62.1
BcaB03g14321 Brassica carinata HOM05D002849 ORTHO05D009472 2.6e-21 105.5 87 62.1
Aa31LG7G4740 Aethionema arabicum HOM05D002849 ORTHO05D009472 5.7e-21 104.4 88 60.2
VMungo0540G0079 Vigna mungo HOM05D002849 ORTHO05D009472 9.8e-21 103.6 93 58.1
BcaB07g32046 Brassica carinata HOM05D002849 ORTHO05D009472 1.3e-20 103.2 87 60.9
Carub.0001s1990 Capsella rubella HOM05D002849 ORTHO05D009472 1.3e-20 103.2 87 59.8
A07p15680 Brassica napus HOM05D002849 ORTHO05D009472 2.2e-20 102.4 87 59.8
A07p15790 Brassica napus HOM05D002849 ORTHO05D009472 2.2e-20 102.4 87 59.8
BraA07t29306Z Brassica rapa HOM05D002849 ORTHO05D009472 2.2e-20 102.4 87 59.8
BcaNung03382 Brassica carinata HOM05D002849 ORTHO05D009472 2.8e-20 102.1 87 59.8
C07p23030 Brassica napus HOM05D002849 ORTHO05D009472 2.8e-20 102.1 87 59.8
BolC7t42844H Brassica oleracea HOM05D002849 ORTHO05D009472 2.8e-20 102.1 87 59.8
ATR0661G222 Amborella trichopoda HOM05D002849 ORTHO05D009472 8.3e-20 100.5 88 59.1
Sp5g31300 Schrenkiella parvula HOM05D002849 ORTHO05D009472 1.1e-19 100.1 87 58.6
THA.LOC104811451 Tarenaya hassleriana HOM05D002849 ORTHO05D009472 1.4e-19 99.8 111 49.5
SHI08004 Sapria himalayana HOM05D002849 ORTHO05D009472 4.1e-19 98.2 88 55.7
Zm00001eb373140 Zea mays HOM05D002849 ORTHO05D009472 7.3e-16 87.4 84 48.8
Lalb_Chr01g0008401 Lupinus albus HOM05D002849 ORTHO05D009472 4.0e-14 81.6 88 47.7
Os06g0213900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D009472 2.0e-13 79.3 89 46.1
SEGI_39053 Sequoiadendron giganteum HOM05D002849 ORTHO05D009472 9.8e-13 77.0 93 45.2
arahy.Tifrunner.gnm1.ann1.H4T2PX Arachis hypogaea HOM05D002849 ORTHO05D009472 1.5e-08 63.2 70 47.1
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 1.5e-08 63.2 70 47.1
Hma1.2p1_1523F.1_g288770 Hydrangea macrophylla HOM05D002849 ORTHO05D009472 3.3e-08 62.0 53 58.5


User provided reference genes

Program Settings