Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 6.7e-125 450.7 225 100.0
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 1.1e-119 433.3 225 95.6
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 7.2e-119 430.6 225 96.0
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 1.7e-88 329.7 223 76.2
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 2.3e-85 319.3 184 84.8
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 7.5e-84 314.3 189 75.7
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 6.4e-83 311.2 177 81.4
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 8.3e-83 310.8 183 79.2
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 2.4e-82 309.3 183 78.7
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 3.2e-82 308.9 231 67.1
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 1.6e-81 306.6 189 74.1
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 1.6e-81 306.6 176 79.5
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 2.1e-81 306.2 228 66.2
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 2.3e-80 302.8 179 76.0
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 2.3e-80 302.8 223 65.0
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 3.0e-80 302.4 179 78.8
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 3.9e-80 302.0 189 73.0
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 5.1e-80 301.6 223 65.5
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 5.1e-80 301.6 191 72.8
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 8.6e-80 300.8 178 77.5
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 1.9e-79 299.7 179 77.7
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 2.5e-79 299.3 197 71.6
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 5.6e-79 298.1 179 74.9
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 5.6e-79 298.1 213 68.1
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 9.5e-79 297.4 192 72.4
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.2e-78 297.0 216 67.1
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 2.8e-78 295.8 179 73.7
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 3.6e-78 295.4 179 76.0
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 4.7e-78 295.0 217 65.9
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 6.2e-78 294.7 184 74.5
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 6.2e-78 294.7 213 67.1
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 8.1e-78 294.3 191 72.8
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 1.1e-77 293.9 216 66.2
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.1e-77 293.9 206 71.4
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.4e-77 293.5 216 66.7
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 1.8e-77 293.1 226 63.7
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 2.3e-77 292.7 174 77.0
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 4.0e-77 292.0 175 75.4
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 1.2e-76 290.4 176 75.6
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 2.0e-76 289.7 189 71.4
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 4.4e-76 288.5 219 63.5
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 1.7e-75 286.6 176 72.7
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 2.9e-75 285.8 176 73.9
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 2.9e-75 285.8 218 64.2
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 4.9e-75 285.0 218 63.3
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 4.9e-75 285.0 205 66.3
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 4.9e-75 285.0 205 64.9
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 1.1e-74 283.9 190 70.0
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.4e-74 283.5 222 66.7
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 2.4e-74 282.7 172 75.0
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 5.4e-74 281.6 194 69.1
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 5.4e-74 281.6 194 69.1
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 5.4e-74 281.6 221 64.7
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 7.1e-74 281.2 176 75.0
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 2.3e-72 276.2 181 69.6
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 3.0e-72 275.8 186 66.7
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 3.0e-72 275.8 194 68.6
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 5.1e-72 275.0 176 72.7
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 5.1e-72 275.0 210 62.9
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 1.1e-71 273.9 176 75.0
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 1.1e-71 273.9 189 68.3
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 1.1e-71 273.9 189 69.8
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 1.1e-71 273.9 220 62.3
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 1.1e-71 273.9 220 62.3
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 1.1e-71 273.9 189 69.8
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 1.5e-71 273.5 177 72.9
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 2.5e-71 272.7 175 71.4
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 2.5e-71 272.7 220 62.3
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 4.3e-71 271.9 177 71.8
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 9.6e-71 270.8 176 73.9
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 9.6e-71 270.8 222 60.4
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 1.2e-70 270.4 172 75.0
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 2.1e-70 269.6 175 72.0
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 2.8e-70 269.2 176 69.9
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 4.7e-70 268.5 182 69.8
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 8.1e-70 267.7 176 71.0
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 1.1e-69 267.3 204 65.7
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 1.8e-69 266.5 219 61.2
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 2.4e-69 266.2 196 66.3
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 8.9e-69 264.2 201 66.2
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 4.4e-68 261.9 177 68.9
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 2.4e-66 256.1 180 71.1
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 5.4e-66 255.0 174 64.4
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 7.1e-66 254.6 180 70.6
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.2e-65 253.8 206 64.6
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 4.6e-65 251.9 221 60.6
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 7.8e-65 251.1 169 69.2
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 1.9e-63 246.5 148 74.3
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 9.6e-63 244.2 159 70.4
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 2.4e-61 239.6 177 64.4
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 6.9e-61 238.0 175 65.7
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 7.6e-60 234.6 147 74.8
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 2.4e-58 229.6 133 78.9
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 3.9e-56 222.2 137 70.8
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 1.5e-55 220.3 182 63.2
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 4.9e-51 205.3 141 68.1
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 6.4e-51 204.9 167 59.3
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 1.9e-50 203.4 152 68.4
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 1.0e-48 197.6 197 53.8
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.3e-48 197.2 160 61.9
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 7.4e-47 191.4 124 71.0
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 3.1e-45 186.0 165 52.1
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 4.0e-45 185.7 167 53.9
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 7.6e-44 181.4 179 50.3
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 3.8e-43 179.1 139 62.6
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 1.9e-42 176.8 181 51.4
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 4.2e-42 175.6 181 45.9
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 3.5e-41 172.6 129 63.6
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 3.7e-38 162.5 123 64.2
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 7.6e-36 154.8 107 69.2
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 7.2e-34 148.3 107 68.2
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 9.3e-34 147.9 85 78.8
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 2.5e-31 139.8 104 60.6
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 4.3e-31 139.0 140 52.9
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 8.2e-30 134.8 84 72.6
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 2.5e-26 123.2 132 51.5
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 1.5e-23 114.0 71 81.7
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 4.3e-23 112.5 63 76.2
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 1.7e-22 110.5 145 40.7
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 3.7e-22 109.4 127 45.7
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 8.2e-22 108.2 120 49.2
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 7.7e-20 101.7 99 58.6
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 6.1e-17 92.0 54 79.6
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 2.3e-16 90.1 71 70.4
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 3.7e-14 82.8 71 66.2
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 9.1e-13 78.2 109 36.7
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 1.2e-09 67.8 48 68.8
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 8.0e-09 65.1 39 76.9
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 2.0e-07 60.5 43 53.5


User provided reference genes

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