Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g035250 Solanum pennellii HOM05D000493 ORTHO05D012499 7.5e-68 260.4 130 100.0
Solyc04g081660.3 Solanum lycopersicum HOM05D000493 ORTHO05D012499 1.3e-51 206.5 112 92.0
PGSC0003DMG400009983 Solanum tuberosum HOM05D000493 ORTHO05D001355 9.8e-36 153.7 111 73.0
Solyc04g082430.3 Solanum lycopersicum HOM05D000493 ORTHO05D001355 2.4e-34 149.1 111 73.0
Sopen04g036020 Solanum pennellii HOM05D000493 ORTHO05D001355 9.2e-34 147.1 111 72.1
Nitab4.5_0000588g0060 Nicotiana tabacum HOM05D000493 ORTHO05D001355 6.8e-29 131.0 111 67.6
CAN.G311.120 Capsicum annuum HOM05D000493 ORTHO05D001355 2.2e-27 125.9 111 65.8
Peaxi162Scf00711g00052 Petunia axillaris HOM05D000493 ORTHO05D001355 3.4e-20 102.1 113 58.4
Rhsim06G0006700 Rhododendron simsii HOM05D000493 ORTHO05D001355 8.4e-19 97.4 112 50.9
Cc10_g00620 Coffea canephora HOM05D000493 ORTHO05D001355 1.9e-18 96.3 111 48.6
Duzib041G0120 Durio zibethinus HOM05D000493 ORTHO05D001355 9.2e-18 94.0 102 50.0
Sabra05G0194700 Salix brachista HOM05D000493 ORTHO05D001355 1.2e-17 93.6 109 48.6
Thecc.08G059900 Theobroma cacao HOM05D000493 ORTHO05D001355 1.6e-17 93.2 109 49.5
Dinv05528 Davidia involucrata HOM05D000493 ORTHO05D001355 4.6e-17 91.7 111 46.8
Actinidia17045 Actinidia chinensis HOM05D001852 ORTHO05D001989 7.8e-17 90.9 111 45.9
PGR083G2581 Punica granatum HOM05D000493 ORTHO05D001355 2.3e-16 89.4 110 45.5
Oeu007478.1 Olea europaea HOM05D000493 ORTHO05D001355 3.0e-16 89.0 112 45.5
Nitab4.5_0010763g0020 Nicotiana tabacum HOM05D000493 ORTHO05D001355 5.1e-16 88.2 120 47.5
vmacro21806 Vaccinium macrocarpon HOM05D000493 ORTHO05D001355 1.5e-15 86.7 110 48.2
Sabra02G0007400 Salix brachista HOM05D000493 ORTHO05D001355 1.9e-15 86.3 111 44.1
Potri.005G251400 Populus trichocarpa HOM05D000493 ORTHO05D001355 2.5e-15 85.9 111 45.0
Peaxi162Scf00064g01134 Petunia axillaris HOM05D000493 ORTHO05D001355 4.3e-15 85.1 125 43.2
Manes.18G004700 Manihot esculenta HOM05D000493 ORTHO05D001355 5.6e-15 84.7 106 44.3
Ciclev10001235m.g Citrus clementina HOM05D000493 ORTHO05D001355 7.3e-15 84.3 113 43.4
Duzib116G0113 Durio zibethinus HOM05D000493 ORTHO05D001355 1.3e-14 83.6 111 44.1
Nitab4.5_0000030g0120 Nicotiana tabacum HOM05D000493 ORTHO05D012499 1.6e-14 83.2 81 55.6
SalBow7G1378 Salvia bowleyana HOM05D000493 ORTHO05D001355 1.6e-14 83.2 111 45.0
CAN.G167.8 Capsicum annuum HOM05D000493 ORTHO05D012499 2.1e-14 82.8 72 62.5
Nn6g31723 Nelumbo nucifera HOM05D000493 ORTHO05D001355 2.1e-14 82.8 110 42.7
QL02p014361 Quercus lobata HOM05D000493 ORTHO05D001355 2.1e-14 82.8 110 44.5
vmacro03553 Vaccinium macrocarpon HOM05D000493 ORTHO05D001355 2.1e-14 82.8 111 47.7
Potri.002G010000 Populus trichocarpa HOM05D000493 ORTHO05D001355 2.8e-14 82.4 111 41.4
TAR376G0690 Trochodendron aralioides HOM05D000493 ORTHO05D001355 4.8e-14 81.6 110 42.7
Sed0000322 Sechium edule HOM05D000493 ORTHO05D001355 6.2e-14 81.3 110 48.2
DCAR_022936 Daucus carota HOM05D000493 ORTHO05D001355 8.1e-14 80.9 113 45.1
CAN.G480.8 Capsicum annuum HOM05D000493 ORTHO05D001355 1.4e-13 80.1 82 54.9
AUR62040799 Chenopodium quinoa HOM05D000493 ORTHO05D001355 1.4e-13 80.1 111 40.5
Migut.C00388 Erythranthe guttata HOM05D000493 ORTHO05D001355 1.4e-13 80.1 97 46.4
SGA_v2.0_scaffold54G19672 Striga asiatica HOM05D000493 ORTHO05D001355 1.4e-13 80.1 112 42.9
Sc15g0004400 Simmondsia chinensis HOM05D000493 ORTHO05D001355 1.8e-13 79.7 110 41.8
MSTRG.980 Avicennia marina HOM05D000493 ORTHO05D001355 2.4e-13 79.3 113 42.5
Gohir.D01G091600 Gossypium hirsutum HOM05D000493 ORTHO05D001355 4.0e-13 78.6 103 45.6
Gorai.002G116700 Gossypium raimondii HOM05D000493 ORTHO05D001355 4.0e-13 78.6 103 45.6
Gohir.D05G256100 Gossypium hirsutum HOM05D000493 ORTHO05D001355 5.3e-13 78.2 107 45.8
Gorai.009G267700 Gossypium raimondii HOM05D000493 ORTHO05D001355 5.3e-13 78.2 107 45.8
Gohir.A01G105300 Gossypium hirsutum HOM05D000493 ORTHO05D001355 6.9e-13 77.8 103 44.7
Nitab4.5_0000699g0040 Nicotiana tabacum HOM05D000493 ORTHO05D001355 6.9e-13 77.8 118 44.9
PSO761G0550 Papaver somniferum HOM05D000493 ORTHO05D001355 9.0e-13 77.4 112 42.0
GSVIVG01009895001 Vitis vinifera HOM05D000493 ORTHO05D001355 9.0e-13 77.4 112 42.9
ClCG11G018710 Citrullus lanatus HOM05D000493 ORTHO05D001355 1.2e-12 77.0 112 47.3
Rhsim07G0255300 Rhododendron simsii HOM05D000493 ORTHO05D001355 1.2e-12 77.0 112 43.8
TAR628G1508 Trochodendron aralioides HOM05D000493 ORTHO05D001355 1.2e-12 77.0 110 41.8
Gohir.A05G254500 Gossypium hirsutum HOM05D000493 ORTHO05D001355 3.4e-12 75.5 107 44.9
TWI56G0988 Tripterygium wilfordii HOM05D000493 ORTHO05D001355 3.4e-12 75.5 102 44.1
Atru.chr13.143 Acer truncatum HOM05D000493 ORTHO05D001355 4.4e-12 75.1 113 38.9
Oeu035841.1 Olea europaea HOM05D000493 ORTHO05D001355 4.4e-12 75.1 120 40.8
CAN.G1049.3 Capsicum annuum HOM05D000493 ORTHO05D001355 5.8e-12 74.7 79 53.2
AUR62036858 Chenopodium quinoa HOM05D000493 ORTHO05D001355 5.8e-12 74.7 111 39.6
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 5.8e-12 74.7 111 37.8
TWI36G1039 Tripterygium wilfordii HOM05D000493 ORTHO05D001355 5.8e-12 74.7 102 44.1
PSO210G4398 Papaver somniferum HOM05D000493 ORTHO05D001355 1.3e-11 73.6 112 42.0
SGA_v2.0_scaffold364G49973 Striga asiatica HOM05D000493 ORTHO05D001355 1.3e-11 73.6 111 42.3
TWI12G0754 Tripterygium wilfordii HOM05D000493 ORTHO05D001355 1.3e-11 73.6 102 42.2
Migut.N02955 Erythranthe guttata HOM05D000493 ORTHO05D001355 2.2e-11 72.8 111 43.2
CAN.G54.8 Capsicum annuum HOM05D000493 ORTHO05D012499 2.9e-11 72.4 85 49.4
Oeu033836.1 Olea europaea HOM05D000493 ORTHO05D001355 2.9e-11 72.4 109 41.3
MELO3C017022.2 Cucumis melo HOM05D000493 ORTHO05D001355 3.8e-11 72.0 112 44.6
Manes.05G133500 Manihot esculenta HOM05D000493 ORTHO05D001355 3.8e-11 72.0 106 41.5
Hma1.2p1_1100F.1_g256980 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 4.9e-11 71.6 110 42.7
Hma1.2p1_1100F.1_g256985 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 4.9e-11 71.6 110 42.7
CsaV3_4G037240 Cucumis sativus L. HOM05D000493 ORTHO05D001355 8.4e-11 70.9 112 44.6
Sopen12g031500 Solanum pennellii HOM05D000493 ORTHO05D001355 1.1e-10 70.5 112 40.2
Hma1.2p1_1067F.1_g253820 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 1.9e-10 69.7 110 41.8
Nn5g30959 Nelumbo nucifera HOM05D000493 ORTHO05D001355 2.4e-10 69.3 109 40.4
Thecc.01G006900 Theobroma cacao HOM05D000493 ORTHO05D001355 2.4e-10 69.3 111 41.4
Aqoxy6G01695 Aquilegia oxysepala HOM05D000493 ORTHO05D001355 7.1e-10 67.8 103 39.8
SalBow6G5575 Salvia bowleyana HOM05D000493 ORTHO05D001355 1.6e-09 66.6 102 42.2
MSTRG.22103 Avicennia marina HOM05D000493 ORTHO05D001355 2.1e-09 66.2 111 42.3
BcaC08g47130 Brassica carinata HOM05D000493 ORTHO05D001355 2.1e-09 66.2 116 37.1
AL2G36410 Arabidopsis lyrata HOM05D000493 ORTHO05D001355 4.6e-09 65.1 123 37.4
Solyc12g094600.3 Solanum lycopersicum HOM05D000493 ORTHO05D001355 4.6e-09 65.1 112 38.4
BraA07t31724Z Brassica rapa HOM05D000493 ORTHO05D001355 6.0e-09 64.7 116 37.1
Eucgr.F01773 Eucalyptus grandis HOM05D000493 ORTHO05D001355 7.8e-09 64.3 108 38.0
A07p41940 Brassica napus HOM05D000493 ORTHO05D001355 1.3e-08 63.5 116 36.2
CSS0033034 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D001355 1.3e-08 63.5 110 40.0
Duzib147G1019 Durio zibethinus HOM05D000493 ORTHO05D001355 2.3e-08 62.8 115 40.0
Duzib264G0990 Durio zibethinus HOM05D000493 ORTHO05D001355 2.3e-08 62.8 113 39.8
Nitab4.5_0005719g0030 Nicotiana tabacum HOM05D000493 ORTHO05D001355 2.3e-08 62.8 91 42.9
Solyc03g032190.3 Solanum lycopersicum HOM05D000493 ORTHO05D001355 2.3e-08 62.8 106 37.7
Gohir.A02G177100 Gossypium hirsutum HOM05D000493 ORTHO05D001355 3.0e-08 62.4 114 40.4
PSO675G2435 Papaver somniferum HOM05D000493 ORTHO05D001355 3.0e-08 62.4 117 34.2
Carub.0002s2321 Capsella rubella HOM05D000493 ORTHO05D001355 3.9e-08 62.0 123 36.6
CAN.G208.21 Capsicum annuum HOM05D000493 ORTHO05D001355 3.9e-08 62.0 119 38.7
Nitab4.5_0000495g0180 Nicotiana tabacum HOM05D000493 ORTHO05D001355 3.9e-08 62.0 97 40.2
BcaB02g07058 Brassica carinata HOM05D000493 ORTHO05D001355 5.1e-08 61.6 123 35.0
CAN.G354.20 Capsicum annuum HOM05D000493 ORTHO05D001355 6.6e-08 61.2 106 37.7
Gohir.D03G002800 Gossypium hirsutum HOM05D000493 ORTHO05D001355 6.6e-08 61.2 114 40.4
Gorai.003G003000 Gossypium raimondii HOM05D000493 ORTHO05D001355 8.7e-08 60.8 125 38.4
THA.LOC104809782 Tarenaya hassleriana HOM05D000493 ORTHO05D001355 8.7e-08 60.8 107 39.3
BcaC08g45535 Brassica carinata HOM05D000493 ORTHO05D001355 1.1e-07 60.5 104 42.3
C06p32110 Brassica napus HOM05D000493 ORTHO05D001355 1.1e-07 60.5 104 42.3
BolC6t38337H Brassica oleracea HOM05D000493 ORTHO05D001355 1.1e-07 60.5 104 42.3
BraA07t30496Z Brassica rapa HOM05D000493 ORTHO05D001355 1.1e-07 60.5 104 43.3
C06p50510 Brassica napus HOM05D000493 ORTHO05D001355 1.5e-07 60.1 116 37.1
CAN.G315.2 Capsicum annuum HOM05D000493 ORTHO05D012499 1.5e-07 60.1 71 50.7
DCAR_016774 Daucus carota HOM05D000493 ORTHO05D001355 1.5e-07 60.1 108 36.1
Thhalv10018589m.g Eutrema salsugineum HOM05D000493 ORTHO05D001355 1.5e-07 60.1 123 35.8
AT1G76310 Arabidopsis thaliana HOM05D000493 ORTHO05D001355 1.9e-07 59.7 125 36.0
BolC6t40076H Brassica oleracea HOM05D000493 ORTHO05D001355 1.9e-07 59.7 116 36.2
Sp5g31450 Schrenkiella parvula HOM05D000493 ORTHO05D001355 1.9e-07 59.7 123 35.0
Hma1.2p1_0271F.1_g108920 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 2.5e-07 59.3 113 37.2
Lj2C494G8 Lonicera japonica HOM05D000493 ORTHO05D001355 2.5e-07 59.3 103 36.9
PSO541G4939 Papaver somniferum HOM05D000493 ORTHO05D001355 2.5e-07 59.3 117 33.3
Lj2A496T44 Lonicera japonica HOM05D000493 ORTHO05D001355 3.3e-07 58.9 103 35.9
Sopen03g006030 Solanum pennellii HOM05D000493 ORTHO05D001355 3.3e-07 58.9 106 36.8
A07p28570 Brassica napus HOM05D000493 ORTHO05D001355 4.3e-07 58.5 104 42.3
PGSC0003DMG400018674 Solanum tuberosum HOM05D000493 ORTHO05D001355 4.3e-07 58.5 106 36.8
CAN.G1352.23 Capsicum annuum HOM05D000493 ORTHO05D012499 9.6e-07 57.4 57 54.4
THA.LOC104811466 Tarenaya hassleriana HOM05D000493 ORTHO05D001355 9.6e-07 57.4 104 38.5
Thhalv10007704m.g Eutrema salsugineum HOM05D000493 ORTHO05D001355 1.3e-06 57.0 109 37.6
Potri.005G100000 Populus trichocarpa HOM05D000493 ORTHO05D001355 1.3e-06 57.0 113 37.2
Ciclev10025564m.g Citrus clementina HOM05D000493 ORTHO05D001355 1.6e-06 56.6 116 34.5
Aa31LG4G6400 Aethionema arabicum HOM05D000493 ORTHO05D001355 2.1e-06 56.2 117 32.5
Oeu042491.1 Olea europaea HOM05D000493 ORTHO05D001355 2.8e-06 55.8 106 34.0
CARHR069870 Cardamine hirsuta HOM05D000493 ORTHO05D001355 3.6e-06 55.5 124 35.5
COL.COLO4_05225 Corchorus olitorius HOM05D000493 ORTHO05D001355 4.8e-06 55.1 109 36.7
Ah.00g000840 Amaranthus hybridus HOM05D000493 ORTHO05D001355 6.2e-06 54.7 109 34.9
HanXRQChr14g0427421 Helianthus annuus HOM05D000493 ORTHO05D001355 6.2e-06 54.7 113 32.7


User provided reference genes

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