Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 6.8e-254 880.2 447 100.0
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.1e-248 862.8 447 98.4
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.7e-241 839.0 448 95.3
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 6.4e-228 793.9 447 90.2
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.6e-213 745.3 447 85.9
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 6.1e-202 707.6 447 80.8
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 1.7e-175 619.8 448 70.5
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 8.6e-172 607.4 445 70.1
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.8e-167 592.4 457 66.3
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 3.7e-167 592.0 443 67.3
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 1.8e-166 589.7 448 68.8
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.8e-166 589.7 457 66.3
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 2.4e-166 589.3 447 67.8
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.6e-165 586.6 430 69.3
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.6e-165 586.6 467 64.7
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 8.6e-164 580.9 433 67.2
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.1e-163 580.5 436 67.7
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.1e-163 580.5 460 64.8
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 1.9e-163 579.7 448 67.9
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.8e-162 575.9 476 63.7
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 2.8e-162 575.9 439 66.7
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.6e-162 575.5 435 69.4
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 2.3e-161 572.8 443 66.6
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.0e-161 572.0 448 65.2
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 5.2e-161 571.6 433 66.7
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 5.2e-161 571.6 446 65.9
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.2e-160 570.5 437 65.7
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 1.5e-160 570.1 469 65.2
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.0e-160 569.7 436 66.1
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 2.0e-160 569.7 439 65.6
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 2.0e-160 569.7 438 66.2
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.6e-160 569.3 439 65.4
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 2.6e-160 569.3 439 65.4
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 4.4e-160 568.5 440 66.6
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 7.5e-160 567.8 523 59.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.7e-159 566.6 439 65.1
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.9e-159 565.8 489 62.8
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 6.4e-159 564.7 453 66.0
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.1e-158 563.9 437 65.7
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 3.2e-158 562.4 441 64.9
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 5.4e-158 561.6 439 64.7
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.2e-157 560.5 444 65.1
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.2e-157 560.5 431 66.6
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 6.0e-157 558.1 454 65.2
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 6.0e-157 558.1 411 68.6
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 7.8e-157 557.8 436 65.4
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.3e-156 557.0 433 65.6
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 3.9e-156 555.4 448 64.1
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 5.0e-156 555.1 444 64.4
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 2.5e-155 552.7 440 64.5
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 2.1e-154 549.7 456 63.6
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.1e-153 547.4 454 61.9
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 2.3e-153 546.2 458 62.2
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 2.0e-152 543.1 443 64.1
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 9.8e-152 540.8 449 62.4
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.3e-151 540.4 443 64.6
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.3e-151 540.4 447 61.5
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.7e-151 540.0 436 62.8
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 8.3e-151 537.7 442 62.4
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 8.3e-151 537.7 437 63.6
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.4e-150 537.0 453 62.5
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 2.4e-150 536.2 459 61.7
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 4.1e-150 535.4 443 61.4
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 5.4e-150 535.0 449 61.5
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 9.2e-150 534.3 494 58.5
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.2e-149 533.9 447 61.7
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.0e-148 530.8 444 60.6
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 1.0e-148 530.8 463 61.1
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.3e-148 530.4 441 62.4
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 2.3e-148 529.6 436 62.4
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 2.5e-147 526.2 434 63.1
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 9.5e-147 524.2 455 61.8
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.1e-146 523.1 462 60.6
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 4.7e-146 521.9 439 60.4
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 6.2e-146 521.5 432 60.2
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 8.1e-146 521.2 432 60.2
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 8.1e-146 521.2 448 60.7
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 3.1e-145 519.2 427 62.1
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.3e-143 513.8 438 59.6
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.3e-143 513.8 438 59.6
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.7e-143 513.5 453 58.7
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 3.7e-143 512.3 441 60.3
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 8.3e-143 511.1 428 61.2
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 8.3e-143 511.1 456 59.0
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 1.4e-142 510.4 505 54.5
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.9e-142 510.0 438 60.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 3.2e-142 509.2 409 63.8
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 4.1e-142 508.8 435 60.7
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 4.1e-142 508.8 436 61.2
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 5.4e-142 508.4 413 64.6
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.5e-141 505.8 459 58.2
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 6.6e-140 501.5 438 59.4
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 8.1e-138 494.6 420 62.9
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.4e-137 493.8 474 55.1
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 6.8e-137 491.5 450 59.8
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.2e-134 482.6 428 59.6
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 5.4e-134 481.9 376 63.8
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 7.1e-134 481.5 432 62.5
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 5.1e-132 475.3 479 54.9
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 4.0e-129 465.7 473 53.7
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 5.8e-128 461.8 438 57.3
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 9.9e-128 461.1 478 54.0
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 9.9e-128 461.1 437 57.2
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 1.0e-124 451.1 475 52.4
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 3.6e-122 442.6 346 65.0
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 5.4e-118 428.7 369 60.4
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 2.2e-111 406.8 465 49.0
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.7e-106 389.4 443 50.8
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 9.0e-105 384.8 291 67.7
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 6.5e-103 378.6 525 42.7
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 1.9e-99 367.1 498 42.6
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 2.8e-98 363.2 318 59.7
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.5e-96 357.5 469 44.3
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 1.1e-94 351.3 361 55.4
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.0e-92 344.7 357 55.7
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.8e-89 334.0 289 61.6
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 9.7e-83 311.6 617 35.3
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 1.2e-77 294.7 525 38.7
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 3.2e-62 243.4 463 35.0
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.8e-60 237.7 457 35.4
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 5.4e-57 226.1 483 33.5
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 8.9e-44 182.2 247 42.9
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 2.0e-43 181.0 158 59.5
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.7e-42 177.9 240 45.8
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 6.2e-37 159.5 215 42.8
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 1.3e-26 125.2 127 59.8
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 8.3e-26 122.5 188 46.3
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 5.4e-25 119.8 188 45.2
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 3.5e-24 117.1 114 54.4
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.5e-22 110.9 90 65.6
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 5.2e-20 103.2 149 42.3
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.9e-17 94.7 73 57.5
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 2.3e-15 87.8 91 51.6
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 6.6e-15 86.3 59 67.8
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 6.6e-15 86.3 89 50.6
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 3.3e-14 84.0 109 45.9
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 4.8e-13 80.1 111 45.0
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 2.9e-10 70.9 94 41.5
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 2.9e-10 70.9 92 46.7
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.1e-09 68.9 92 45.7
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 7.1e-09 66.2 39 71.8
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 9.3e-09 65.9 150 33.3
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 2.3e-07 61.2 79 48.1
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 2.3e-07 61.2 34 82.4
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 6.6e-07 59.7 59 52.5
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 1.9e-06 58.2 52 55.8


User provided reference genes

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