Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 4.3e-73 278.1 160 100.0
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 8.0e-72 273.9 160 98.8
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 3.3e-65 251.9 193 71.0
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 9.2e-60 233.8 160 88.1
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 1.6e-56 223.0 160 84.4
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 3.4e-54 215.3 159 79.2
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 4.9e-53 211.5 160 76.9
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 1.9e-52 209.5 160 77.5
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 2.1e-51 206.1 161 76.4
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 1.0e-50 203.8 161 77.0
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 3.0e-50 202.2 166 72.9
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 6.6e-50 201.1 160 74.4
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 6.6e-50 201.1 161 75.2
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 1.1e-49 200.3 160 76.9
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 1.1e-49 200.3 161 77.0
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 1.5e-49 199.9 160 74.4
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 1.5e-49 199.9 159 74.8
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 2.5e-49 199.1 160 76.9
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 5.6e-49 198.0 160 75.6
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 7.3e-49 197.6 160 71.9
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 1.2e-48 196.8 162 75.3
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 3.6e-48 195.3 160 73.8
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 1.4e-47 193.4 160 73.1
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 2.4e-47 192.6 160 72.5
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 4.0e-47 191.8 160 72.5
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 4.0e-47 191.8 162 73.5
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 5.2e-47 191.4 160 71.9
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 6.8e-47 191.0 165 69.1
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 6.8e-47 191.0 154 67.5
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 8.9e-47 190.7 160 71.9
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 2.6e-46 189.1 161 73.3
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 3.4e-46 188.7 162 72.2
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 4.4e-46 188.3 162 72.2
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 5.8e-46 188.0 161 70.8
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 5.8e-46 188.0 160 72.5
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 1.3e-45 186.8 155 75.5
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 1.3e-45 186.8 160 71.2
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 1.7e-45 186.4 154 74.7
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 1.7e-45 186.4 151 76.2
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 2.9e-45 185.7 161 70.8
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 2.9e-45 185.7 169 71.0
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 3.8e-45 185.3 153 75.2
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 3.8e-45 185.3 162 72.8
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 6.4e-45 184.5 155 72.3
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 1.9e-44 183.0 162 72.2
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 1.9e-44 183.0 157 75.2
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 4.2e-44 181.8 160 70.0
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 9.2e-44 180.6 153 71.2
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 1.2e-43 180.3 160 73.1
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 1.2e-43 180.3 162 69.8
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 1.6e-43 179.9 153 73.2
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 2.7e-43 179.1 159 71.7
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 7.8e-43 177.6 155 72.9
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 1.0e-42 177.2 171 66.7
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 1.3e-42 176.8 154 70.1
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 1.3e-42 176.8 159 72.3
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 2.3e-42 176.0 150 70.0
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 3.0e-42 175.6 150 71.3
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 3.9e-42 175.3 153 71.2
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 6.6e-42 174.5 160 69.4
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 1.1e-41 173.7 159 71.1
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 1.1e-41 173.7 159 69.2
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 1.1e-41 173.7 155 69.7
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 1.1e-41 173.7 153 70.6
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 1.9e-41 172.9 152 70.4
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 1.9e-41 172.9 159 70.4
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 2.5e-41 172.6 159 69.8
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 4.3e-41 171.8 161 68.3
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 9.6e-41 170.6 159 69.2
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 9.6e-41 170.6 160 69.4
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 1.2e-40 170.2 159 69.8
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 1.2e-40 170.2 199 59.3
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 2.1e-40 169.5 159 69.2
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 3.6e-40 168.7 160 70.6
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 6.2e-40 167.9 200 59.5
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 1.4e-39 166.8 161 65.8
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 1.4e-39 166.8 153 68.6
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 2.0e-38 162.9 151 70.9
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 4.4e-38 161.8 145 71.0
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 4.4e-38 161.8 152 69.7
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 5.8e-38 161.4 152 69.7
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 1.3e-37 160.2 152 68.4
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 1.3e-37 160.2 152 69.1
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 2.2e-37 159.5 152 67.8
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 2.2e-37 159.5 118 78.8
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 2.9e-37 159.1 152 68.4
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 3.8e-37 158.7 161 64.6
AagrBONN_evm.TU.Sc2ySwM_369.321 Anthoceros agrestis HOM05D007166 ORTHO05D009039 9.3e-36 154.1 124 71.8
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 2.7e-35 152.5 159 67.3
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 1.3e-34 150.2 152 60.5
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.9e-33 146.4 151 67.5
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 1.9e-33 146.4 121 73.6
Pp3s104_40 Physcomitrium patens HOM05D007166 ORTHO05D009039 2.5e-33 146.0 142 63.4
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 9.6e-33 144.1 185 45.4
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 2.8e-32 142.5 145 61.4
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 6.2e-32 141.4 173 50.9
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 4.9e-29 131.7 124 60.5
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 1.2e-27 127.1 103 66.0
CBR_g44435 Chara braunii HOM05D007166 ORTHO05D009039 2.3e-26 122.9 124 62.9
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 2.5e-25 119.4 111 57.7
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 2.1e-24 116.3 108 58.3
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 4.9e-21 105.1 100 58.0
arahy.Tifrunner.gnm1.ann1.MS74EG Arachis hypogaea HOM05D007166 ORTHO05D009039 1.3e-16 90.5 115 47.8
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 3.7e-16 89.0 103 51.5
Aqoxy5G01769 Aquilegia oxysepala HOM05D007166 ORTHO05D009039 2.6e-14 82.8 91 51.6
ATR0912G003 Amborella trichopoda HOM05D007166 ORTHO05D009039 1.6e-11 73.6 60 60.0
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 3.5e-11 72.4 101 43.6
MBI09_g08444_MAGBIO Magnolia biondii HOM05D007166 ORTHO05D009039 6.1e-11 71.6 91 46.2
EL10Ac4g08279 Beta vulgaris HOM05D007166 ORTHO05D009039 8.2e-08 61.2 65 50.8


User provided reference genes

Program Settings