Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g034840 Solanum pennellii HOM05D006698 ORTHO05D008415 3.7e-312 1074.7 534 100.0
Solyc04g081230.3 Solanum lycopersicum HOM05D006698 ORTHO05D008415 6.0e-305 1050.0 534 97.6
PGSC0003DMG400003770 Solanum tuberosum HOM05D006698 ORTHO05D008415 1.7e-304 1048.5 534 97.2
CAN.G1271.13 Capsicum annuum HOM05D006698 ORTHO05D008415 5.4e-282 973.8 534 88.8
Peaxi162Scf00287g01719 Petunia axillaris HOM05D006698 ORTHO05D008415 7.4e-263 910.2 536 82.6
Nitab4.5_0001988g0020 Nicotiana tabacum HOM05D006698 ORTHO05D008415 4.5e-244 847.8 484 83.7
Oeu027550.1 Olea europaea HOM05D006698 ORTHO05D008415 1.2e-199 700.3 538 65.2
Rhsim06G0023700 Rhododendron simsii HOM05D006698 ORTHO05D008415 3.1e-192 675.6 542 62.7
MSTRG.22331 Avicennia marina HOM05D006698 ORTHO05D008415 6.8e-192 674.5 538 62.1
CSS0038613 Camellia sinensis var. sinensis HOM05D006698 ORTHO05D008415 6.8e-192 674.5 540 62.2
Cc10_g01920 Coffea canephora HOM05D006698 ORTHO05D008415 2.2e-190 669.5 596 58.7
Lj4A795T33 Lonicera japonica HOM05D006698 ORTHO05D008415 1.7e-187 659.8 539 61.0
SGA_v2.0_scaffold47G17495 Striga asiatica HOM05D006698 ORTHO05D008415 1.6e-185 653.3 537 60.0
Thecc.08G041000 Theobroma cacao HOM05D006698 ORTHO05D008415 2.0e-183 646.4 541 60.4
Ciclev10000799m.g Citrus clementina HOM05D006698 ORTHO05D008415 1.3e-182 643.7 541 59.3
Migut.N03146 Erythranthe guttata HOM05D006698 ORTHO05D008415 1.3e-182 643.7 538 58.2
Oeu027551.1 Olea europaea HOM05D006698 ORTHO05D008415 4.1e-181 638.6 492 64.4
Cfa013924 Carpinus fangiana HOM05D006698 ORTHO05D008415 9.2e-181 637.5 541 59.5
GSVIVG01009862001 Vitis vinifera HOM05D006698 ORTHO05D008415 9.2e-181 637.5 539 59.2
MELO3C003770.2 Cucumis melo HOM05D006698 ORTHO05D008415 2.7e-180 636.0 541 57.1
Prupe.1G368700 Prunus persica HOM05D006698 ORTHO05D008415 7.8e-180 634.4 541 59.1
Haze_22605 Corylus avellana HOM05D006698 ORTHO05D008415 1.0e-179 634.0 567 57.0
CsaV3_3G045670 Cucumis sativus L. HOM05D006698 ORTHO05D008415 2.3e-179 632.9 543 56.4
QL02p011012 Quercus lobata HOM05D006698 ORTHO05D008415 3.0e-179 632.5 543 59.1
Duzib093G0690 Durio zibethinus HOM05D006698 ORTHO05D008415 5.1e-179 631.7 541 60.6
Gorai.002G124600 Gossypium raimondii HOM05D006698 ORTHO05D008415 5.1e-179 631.7 541 58.8
CiPaw.09G133200 Carya illinoinensis HOM05D006698 ORTHO05D008415 6.6e-179 631.3 541 58.6
Sed0002694 Sechium edule HOM05D006698 ORTHO05D008415 8.6e-179 630.9 543 56.0
vmacro21711 Vaccinium macrocarpon HOM05D006698 ORTHO05D008415 3.3e-178 629.0 563 57.2
Gohir.D01G099300 Gossypium hirsutum HOM05D006698 ORTHO05D008415 7.3e-178 627.9 541 58.8
Gohir.A01G112500 Gossypium hirsutum HOM05D006698 ORTHO05D008415 2.8e-177 625.9 541 58.8
ECA238G1455 Erigeron canadensis HOM05D006698 ORTHO05D008415 4.7e-177 625.2 531 60.1
TAR628G0086 Trochodendron aralioides HOM05D006698 ORTHO05D008415 5.2e-176 621.7 541 58.2
Lsat_1_v5_gn_2_11660 Lactuca sativa HOM05D006698 ORTHO05D008415 2.0e-175 619.8 530 58.7
RcHm_v2.0_Chr6g0302501 Rosa chinensis HOM05D006698 ORTHO05D008415 2.0e-175 619.8 539 57.7
THA.LOC104823101 Tarenaya hassleriana HOM05D006698 ORTHO05D008415 5.8e-175 618.2 540 56.5
CANSAT35G1394 Cannabis sativa HOM05D006698 ORTHO05D008415 2.9e-174 615.9 541 56.4
FAN27G1564 Fragaria x ananassa HOM05D006698 ORTHO05D008415 2.9e-174 615.9 538 56.9
FvH4_2g38790 Fragaria vesca HOM05D006698 ORTHO05D008415 3.8e-174 615.5 538 56.9
MD09G1232000 Malus domestica HOM05D006698 ORTHO05D008415 4.9e-174 615.1 543 57.8
Glyma.04G215400 Glycine max HOM05D006698 ORTHO05D008415 1.1e-173 614.0 542 57.4
PSO170G5361 Papaver somniferum HOM05D006698 ORTHO05D008415 1.4e-173 613.6 540 56.5
Potri.005G236400 Populus trichocarpa HOM05D006698 ORTHO05D008415 3.2e-173 612.5 545 57.2
Aqoxy5G01450 Aquilegia oxysepala HOM05D006698 ORTHO05D008415 4.1e-173 612.1 540 56.3
FAN15G2932 Fragaria x ananassa HOM05D006698 ORTHO05D008415 4.1e-173 612.1 538 56.3
Lj1g0011928 Lotus japonicus HOM05D006698 ORTHO05D008415 4.1e-173 612.1 544 56.6
Cpa.g.sc14.105 Carica papaya HOM05D006698 ORTHO05D008415 9.2e-173 610.9 544 58.5
Nn6g32301 Nelumbo nucifera HOM05D006698 ORTHO05D008415 2.7e-172 609.4 541 58.2
Eucgr.F01632 Eucalyptus grandis HOM05D006698 ORTHO05D008415 3.5e-172 609.0 542 55.0
HanXRQChr04g0101141 Helianthus annuus HOM05D006698 ORTHO05D008415 6.0e-172 608.2 534 57.5
Sabra05G0182800 Salix brachista HOM05D006698 ORTHO05D008415 2.3e-171 606.3 542 57.2
TPR.G18731 Trifolium pratense HOM05D006698 ORTHO05D008415 3.0e-171 605.9 541 54.9
PSO210G5790 Papaver somniferum HOM05D006698 ORTHO05D008415 5.1e-171 605.1 540 55.7
SalBow8G5338 Salvia bowleyana HOM05D006698 ORTHO05D008415 5.1e-171 605.1 586 54.3
Ca_16921_v3 Cicer arietinum L. HOM05D006698 ORTHO05D008415 1.1e-170 604.0 541 55.5
arahy.Tifrunner.gnm1.ann1.32JQZQ Arachis hypogaea HOM05D006698 ORTHO05D008415 1.9e-170 603.2 541 56.4
TWI12G1415 Tripterygium wilfordii HOM05D006698 ORTHO05D008415 2.5e-170 602.8 541 56.2
arahy.Tifrunner.gnm1.ann1.HU0S2W Arachis hypogaea HOM05D006698 ORTHO05D008415 7.3e-170 601.3 541 56.2
Hund24100 Selenicereus undatus HOM05D006698 ORTHO05D008415 2.1e-169 599.7 538 55.8
Medtr3g095660 Medicago truncatula HOM05D006698 ORTHO05D008415 3.4e-167 592.4 541 55.6
Phvul.009G147800 Phaseolus vulgaris HOM05D006698 ORTHO05D008415 9.9e-167 590.9 541 56.7
Lalb_Chr08g0238541 Lupinus albus HOM05D006698 ORTHO05D008415 1.7e-166 590.1 540 55.7
AT5G39590 Arabidopsis thaliana HOM05D006698 ORTHO05D008415 5.4e-165 585.1 545 53.8
C04p46000 Brassica napus HOM05D006698 ORTHO05D008415 2.1e-164 583.2 543 53.4
Carub.0007s3635 Capsella rubella HOM05D006698 ORTHO05D008415 2.1e-164 583.2 545 53.6
AL7G50720 Arabidopsis lyrata HOM05D006698 ORTHO05D008415 2.7e-164 582.8 545 53.4
BolC4t26182H Brassica oleracea HOM05D006698 ORTHO05D008415 6.0e-164 581.6 543 53.2
CARHR262700 Cardamine hirsuta HOM05D006698 ORTHO05D008415 7.8e-164 581.3 543 52.5
AUR62035724 Chenopodium quinoa HOM05D006698 ORTHO05D008415 1.3e-163 580.5 538 53.0
VMungo1309G0200 Vigna mungo HOM05D006698 ORTHO05D008415 5.1e-163 578.6 541 55.5
DCAR_009935 Daucus carota HOM05D006698 ORTHO05D008415 6.6e-163 578.2 540 54.3
PGR083G1075 Punica granatum HOM05D006698 ORTHO05D008415 1.9e-162 576.6 548 55.3
BraA04t16897Z Brassica rapa HOM05D006698 ORTHO05D008415 3.3e-162 575.9 543 53.0
Sp7g02400 Schrenkiella parvula HOM05D006698 ORTHO05D008415 3.3e-162 575.9 543 52.9
A04p12330 Brassica napus HOM05D006698 ORTHO05D008415 4.3e-162 575.5 543 52.9
Ah.11g039450 Amaranthus hybridus HOM05D006698 ORTHO05D008415 6.9e-160 568.2 538 53.2
EL10Ac1g02260 Beta vulgaris HOM05D006698 ORTHO05D008415 4.2e-157 558.9 538 50.2
FAN20G0171 Fragaria x ananassa HOM05D006698 ORTHO05D008415 2.1e-156 556.6 630 48.1
Aa31LG9G16490 Aethionema arabicum HOM05D006698 ORTHO05D008415 5.1e-155 552.0 576 48.4
Atru.chr13.326 Acer truncatum HOM05D006698 ORTHO05D008415 2.5e-154 549.7 468 59.6
ClCG05G018510 Citrullus lanatus HOM05D006698 ORTHO05D008415 1.3e-153 547.4 543 50.8
MBI09_g13764_MAGBIO Magnolia biondii HOM05D006698 ORTHO05D008415 2.4e-152 543.1 525 55.0
PSO170G6283 Papaver somniferum HOM05D006698 ORTHO05D008415 2.2e-150 536.6 549 51.2
PSO210G1198 Papaver somniferum HOM05D006698 ORTHO05D008415 2.9e-150 536.2 549 51.2
Thhalv10027724m.g Eutrema salsugineum HOM05D006698 ORTHO05D008415 2.4e-149 533.1 543 49.5
Actinidia16966 Actinidia chinensis HOM05D006698 ORTHO05D008415 9.3e-149 531.2 447 60.6
AUR62035437 Chenopodium quinoa HOM05D006698 ORTHO05D008415 1.3e-147 527.3 457 54.0
BcaB06g27346 Brassica carinata HOM05D006698 ORTHO05D008415 2.4e-144 516.5 542 48.7
Manes.18G015700 Manihot esculenta HOM05D006698 ORTHO05D008415 9.3e-141 504.6 428 59.6
Psat5g063280 Pisum sativum HOM05D006698 ORTHO05D008415 3.0e-131 473.0 471 50.1
HPP92_014935 Vanilla planifolia HOM05D006698 ORTHO05D008415 1.1e-130 471.1 543 47.0
Dinv31825 Davidia involucrata HOM05D006698 ORTHO05D008415 1.7e-129 467.2 540 48.5
SHI08084 Sapria himalayana HOM05D006698 ORTHO05D008415 1.1e-128 464.5 559 47.8
ATR0147G003 Amborella trichopoda HOM05D006698 ORTHO05D008415 1.8e-128 463.8 549 45.7
Os04g0663700 Oryza sativa ssp. japonica HOM05D006698 ORTHO05D008415 4.5e-119 432.6 554 45.5
Zm00001eb067290 Zea mays HOM05D006698 ORTHO05D008415 5.9e-119 432.2 558 44.8
CDE09G0091 Ceratophyllum demersum HOM05D006698 ORTHO05D008415 1.0e-118 431.4 468 48.9
Potri.002G025032 Populus trichocarpa HOM05D006698 ORTHO05D008415 5.0e-118 429.1 310 66.5
SEGI_26467 Sequoiadendron giganteum HOM05D006698 ORTHO05D008415 1.2e-106 391.3 487 45.6
Sc15g0005110 Simmondsia chinensis HOM05D006698 ORTHO05D008415 3.5e-103 379.8 400 48.2
Pp3c16_7090 Physcomitrium patens HOM05D006698 ORTHO05D008415 2.3e-91 340.5 559 36.5
Mapoly0043s0042 Marchantia polymorpha HOM05D006698 ORTHO05D008415 1.8e-83 314.3 571 35.6
Pp3c5_11350 Physcomitrium patens HOM05D006698 ORTHO05D008415 1.2e-79 301.6 561 34.6
SMO145G0265 Selaginella moellendorffii HOM05D006698 ORTHO05D008415 3.9e-78 296.6 466 38.2
AagrBONN_evm.TU.Sc2ySwM_344.812 Anthoceros agrestis HOM05D006698 ORTHO05D008415 1.1e-75 288.5 569 36.4
AagrBONN_evm.TU.Sc2ySwM_344.842 Anthoceros agrestis HOM05D006698 ORTHO05D008415 8.9e-75 285.4 562 36.1
unitig_27.g25099 Utricularia gibba HOM05D006698 ORTHO05D008415 5.8e-74 282.7 218 63.3
unitig_27.g25098 Utricularia gibba HOM05D006698 ORTHO05D008415 5.8e-58 229.6 256 48.0
Glyma.06G150801 Glycine max HOM05D006698 ORTHO05D008415 9.3e-56 222.2 208 54.8
QL03p018220 Quercus lobata HOM05D006698 ORTHO05D008415 3.8e-41 173.7 108 74.1
Potri.002G024966 Populus trichocarpa HOM05D006698 ORTHO05D008415 4.9e-41 173.3 173 53.8
QL03p018243 Quercus lobata HOM05D006698 ORTHO05D008415 3.3e-29 134.0 187 41.7
Actinidia16965 Actinidia chinensis HOM05D006698 ORTHO05D008415 1.3e-28 132.1 76 82.9
HanXRQChr05g0147331 Helianthus annuus HOM05D006698 ORTHO05D008415 1.9e-24 118.2 119 44.5
Medtr7g098720 Medicago truncatula HOM05D006698 ORTHO05D008415 2.5e-24 117.9 124 48.4
Oeu046256.1 Olea europaea HOM05D006698 ORTHO05D008415 2.2e-17 94.7 63 66.7
Cpa.g.sc14.104 Carica papaya HOM05D006698 ORTHO05D008415 2.3e-14 84.7 73 60.3
MBI06_g37498_MAGBIO Magnolia biondii HOM05D002910 ORTHO05D030039 2.2e-09 68.2 92 40.2
Duzib116G0861 Durio zibethinus HOM05D006698 ORTHO05D008415 4.2e-08 63.9 36 77.8
ATR0772G016 Amborella trichopoda HOM05D006431 ORTHO05D007918 4.7e-07 60.5 122 30.3
EL10Ac7g16823 Beta vulgaris HOM05D006431 ORTHO05D007918 4.7e-07 60.5 128 29.7
ATR0370G001 Amborella trichopoda HOM05D006698 ORTHO05D008415 1.4e-06 58.9 51 58.8


User provided reference genes

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