Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 5.5e-123 444.5 257 100.0
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 1.3e-119 433.3 254 98.0
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 2.0e-104 382.9 247 91.5
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 1.4e-97 360.1 256 83.2
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 4.4e-88 328.6 257 73.9
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 2.2e-71 273.1 259 61.4
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 1.1e-70 270.8 257 62.3
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 1.4e-70 270.4 258 60.9
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.6e-69 265.4 283 62.2
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 2.3e-68 263.1 262 60.7
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 8.6e-68 261.2 255 58.4
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.1e-67 260.8 257 59.1
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 1.1e-67 260.8 253 58.5
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.9e-67 260.0 258 59.7
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 7.3e-67 258.1 262 57.3
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 2.8e-66 256.1 263 58.9
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.1e-65 254.2 257 60.7
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 1.8e-65 253.4 254 58.7
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 2.4e-65 253.1 253 58.5
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 2.4e-65 253.1 258 58.1
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 3.1e-65 252.7 260 59.2
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 6.9e-65 251.5 260 57.7
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 6.9e-65 251.5 258 57.8
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.5e-64 250.4 259 57.9
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 2.6e-64 249.6 257 57.6
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 2.2e-63 246.5 255 55.7
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 3.8e-63 245.7 258 55.0
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 3.8e-63 245.7 255 56.1
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 1.1e-62 244.2 262 56.5
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 3.2e-62 242.7 256 58.6
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 3.2e-62 242.7 258 55.4
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 5.4e-62 241.9 253 58.5
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.2e-61 240.7 255 58.8
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 1.2e-61 240.7 258 55.0
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 1.2e-61 240.7 260 57.3
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 1.6e-61 240.4 257 53.7
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 2.1e-61 240.0 273 52.0
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 3.5e-61 239.2 258 53.9
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 6.0e-61 238.4 256 57.4
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 1.3e-60 237.3 298 50.0
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 3.0e-60 236.1 258 53.9
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 6.6e-60 235.0 255 51.4
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 8.7e-60 234.6 255 52.2
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 4.3e-59 232.3 257 54.5
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 7.3e-59 231.5 257 54.1
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 9.6e-59 231.1 254 52.0
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.3e-58 230.7 255 51.8
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 1.6e-58 230.3 258 53.9
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.6e-58 230.3 255 51.4
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 1.6e-58 230.3 258 53.9
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 3.6e-58 229.2 269 52.0
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 3.6e-58 229.2 255 56.1
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 4.8e-58 228.8 247 55.5
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 4.8e-58 228.8 257 54.5
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 2.4e-57 226.5 259 52.5
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 4.0e-57 225.7 255 54.9
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 6.9e-57 224.9 257 52.9
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 9.0e-57 224.6 265 54.3
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 2.0e-56 223.4 224 62.5
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 4.5e-56 222.2 188 67.6
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 7.6e-56 221.5 260 52.7
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 9.9e-56 221.1 261 53.3
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 8.4e-55 218.0 123 93.5
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 2.7e-53 213.0 258 52.7
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 7.9e-53 211.5 254 52.4
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.8e-52 210.3 123 88.6
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.3e-52 209.9 257 49.8
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 2.3e-52 209.9 123 88.6
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 6.7e-52 208.4 219 56.6
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 3.3e-51 206.1 253 51.4
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 7.4e-51 204.9 242 49.6
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 1.4e-49 200.7 257 48.2
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 1.4e-49 200.7 255 48.2
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 1.8e-49 200.3 231 54.1
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 3.1e-49 199.5 261 49.4
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 6.9e-49 198.4 220 54.1
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 4.5e-48 195.7 226 52.2
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 7.6e-48 194.9 230 52.2
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 2.9e-47 193.0 222 51.4
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 1.6e-45 187.2 252 48.0
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 1.0e-44 184.5 226 50.9
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 1.0e-44 184.5 249 45.0
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 5.1e-44 182.2 233 49.8
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 5.3e-41 172.2 99 88.9
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 9.0e-41 171.4 121 73.6
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.5e-40 169.1 95 91.6
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 1.0e-39 167.9 264 40.5
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 1.7e-39 167.2 253 42.7
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 3.8e-39 166.0 255 42.7
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 6.5e-39 165.2 311 39.2
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 1.4e-38 164.1 253 43.5
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 3.2e-38 162.9 252 41.7
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 3.2e-38 162.9 252 41.7
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 3.2e-38 162.9 252 41.7
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 4.2e-38 162.5 253 43.5
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 4.2e-38 162.5 254 43.7
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 4.2e-38 162.5 254 42.5
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 2.1e-37 160.2 253 41.1
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.5e-37 159.5 221 45.7
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 4.6e-37 159.1 229 53.7
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 7.9e-37 158.3 202 50.5
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 1.0e-36 157.9 254 41.7
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 1.8e-36 157.1 241 45.6
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 3.9e-36 156.0 103 77.7
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 1.1e-35 154.5 253 40.3
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 1.5e-35 154.1 199 50.3
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 1.3e-34 151.0 100 76.0
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 3.7e-34 149.4 259 40.9
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 2.0e-32 143.7 260 39.2
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.0e-32 143.7 100 75.0
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 1.4e-30 137.5 255 38.4
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 5.3e-25 119.0 97 68.0
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 1.5e-24 117.5 258 34.1
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 7.7e-24 115.2 103 60.2
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 1.7e-23 114.0 184 43.5
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 3.8e-23 112.8 184 42.9
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 6.5e-23 112.1 268 31.3
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 1.1e-22 111.3 176 45.5
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 3.6e-21 106.3 62 88.7
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 2.0e-19 100.5 233 33.0
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 2.4e-17 93.6 66 69.7
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 6.9e-17 92.0 62 75.8
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 3.4e-16 89.7 198 36.4
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 3.4e-16 89.7 158 41.8
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.7e-15 87.4 171 39.8
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 1.7e-15 87.4 53 81.1
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.2e-15 87.0 161 41.0
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 4.2e-14 82.8 169 37.9
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 4.2e-14 82.8 185 35.1
CAN.G257.103 Capsicum annuum HOM05D005370 ORTHO05D006659 4.7e-13 79.3 54 75.9
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 6.1e-13 79.0 62 72.6
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.0e-12 78.2 200 34.0
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 6.7e-12 75.5 118 40.7
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 2.6e-11 73.6 110 49.1
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 3.7e-10 69.7 150 36.7
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 2.0e-08 63.9 220 28.6
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 5.0e-07 59.3 63 47.6
QL06p015203 Quercus lobata HOM05D005370 ORTHO05D006659 9.4e-06 55.1 34 73.5


User provided reference genes

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