Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 1.0e-271 939.9 614 100.0
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 2.2e-258 895.6 614 90.4
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.4e-172 610.5 457 76.4
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.2e-126 458.0 536 56.5
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.7e-122 444.1 478 61.1
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 2.1e-96 357.5 513 48.9
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 1.3e-82 311.6 430 48.1
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.9e-65 254.6 427 44.5
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.3e-64 251.9 427 43.8
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 1.6e-64 251.5 479 41.5
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 3.3e-57 227.3 423 37.4
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 7.4e-57 226.1 187 57.2
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 4.8e-56 223.4 216 53.2
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 7.6e-54 216.1 220 47.3
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 7.1e-52 209.5 484 37.8
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 4.6e-51 206.8 448 37.7
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 1.8e-50 204.9 355 36.3
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 5.7e-49 199.9 400 34.2
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 2.1e-48 198.0 422 34.1
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 8.2e-48 196.1 376 36.4
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.1e-47 195.7 370 35.9
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 1.8e-47 194.9 480 33.1
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 3.1e-47 194.1 451 33.9
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 4.1e-47 193.7 380 36.3
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 4.1e-47 193.7 448 34.8
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 4.1e-47 193.7 443 35.7
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 5.3e-47 193.4 402 35.8
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 9.0e-47 192.6 257 40.1
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.5e-46 191.8 493 31.4
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 2.0e-46 191.4 246 42.3
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 2.6e-46 191.0 268 42.2
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 1.3e-45 188.7 295 41.0
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.0e-45 186.8 275 37.8
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 8.4e-45 186.0 363 32.0
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.4e-44 185.3 398 33.4
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.9e-44 184.9 422 34.1
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 3.2e-44 184.1 465 32.5
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 7.9e-43 179.5 384 34.4
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 8.7e-42 176.0 336 35.1
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 8.7e-42 176.0 407 32.9
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 8.7e-42 176.0 457 34.6
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 4.3e-41 173.7 203 47.3
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 7.4e-41 172.9 274 36.9
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 2.2e-40 171.4 455 31.9
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 2.2e-40 171.4 412 32.5
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.8e-39 168.3 456 32.0
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.8e-39 168.3 548 27.4
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.8e-39 168.3 548 27.4
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 1.3e-37 162.2 430 29.8
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 1.9e-36 158.3 328 34.5
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 7.2e-36 156.4 333 32.1
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.2e-35 155.6 472 30.9
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 2.1e-35 154.8 497 32.4
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.7e-35 154.5 333 31.8
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 1.4e-34 152.1 237 38.0
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.3e-34 151.4 129 62.0
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 6.7e-34 149.8 198 41.9
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 6.7e-34 149.8 241 38.2
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 1.1e-33 149.1 224 37.9
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 1.1e-33 149.1 461 28.6
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 7.4e-33 146.4 259 35.9
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.4e-31 142.1 463 32.0
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 3.1e-31 141.0 261 36.4
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 5.3e-31 140.2 373 31.1
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 9.1e-31 139.4 278 31.7
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 1.2e-30 139.0 407 29.7
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 2.0e-30 138.3 413 30.0
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 5.9e-30 136.7 229 38.9
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 7.7e-30 136.3 479 28.4
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.7e-29 135.2 467 27.6
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 3.8e-29 134.0 285 36.1
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 8.5e-29 132.9 227 37.4
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 8.5e-29 132.9 229 38.4
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 1.4e-28 132.1 224 39.3
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.5e-28 131.3 190 42.1
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 5.5e-28 130.2 227 37.0
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 7.2e-28 129.8 246 36.2
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 9.4e-28 129.4 464 27.6
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 3.6e-27 127.5 274 33.2
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 4.7e-27 127.1 250 35.2
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 7.9e-27 126.3 247 34.0
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 1.4e-26 125.6 216 37.0
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 1.4e-26 125.6 365 29.6
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.8e-26 125.2 421 32.3
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 2.3e-26 124.8 199 35.7
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.1e-26 123.6 402 27.6
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 6.7e-26 123.2 260 33.8
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 6.7e-26 123.2 217 35.5
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 4.4e-25 120.6 276 34.1
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 4.4e-25 120.6 195 36.4
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 1.3e-24 119.0 171 41.5
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 1.7e-24 118.6 221 36.7
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.7e-24 118.6 196 40.3
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 3.7e-24 117.5 213 35.7
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 1.1e-23 115.9 442 27.6
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.1e-23 115.9 212 35.4
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.1e-23 115.9 403 27.5
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.4e-23 115.5 443 27.5
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 2.4e-23 114.8 331 29.3
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.0e-23 113.2 374 29.4
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 1.6e-22 112.1 362 27.9
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.0e-21 109.4 351 26.8
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.7e-21 108.6 224 32.1
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.9e-21 107.8 233 33.9
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 2.5e-20 104.8 424 25.5
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 3.2e-20 104.4 289 28.7
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 4.2e-20 104.0 422 27.3
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 5.5e-20 103.6 454 28.0
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 1.0e-18 99.4 285 29.1
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 1.0e-18 99.4 470 26.2
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 2.3e-18 98.2 415 27.0
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 3.0e-18 97.8 370 25.9
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 4.0e-18 97.4 266 29.7
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 4.0e-18 97.4 449 25.2
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 6.7e-18 96.7 416 26.7
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 1.5e-17 95.5 313 27.5
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.4e-15 88.2 263 27.4
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.2e-14 85.9 201 30.8
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 4.5e-14 84.0 292 26.4
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 2.2e-13 81.6 292 26.4
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 3.2e-12 77.8 375 24.8
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 3.2e-12 77.8 140 37.9
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 4.7e-11 73.9 114 39.5
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 2.6e-09 68.2 158 31.6
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 5.7e-09 67.0 218 28.4
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.3e-08 65.9 109 36.7
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 4.8e-08 63.9 113 37.2
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.8e-08 63.9 109 33.0
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 6.3e-08 63.5 108 35.2
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.3e-08 63.5 139 33.8
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 6.3e-08 63.5 132 31.8
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 1.1e-07 62.8 144 29.9
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.4e-07 62.4 112 33.9
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 1.4e-07 62.4 119 30.3
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.4e-07 62.4 181 28.2
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.8e-07 62.0 139 33.1
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.8e-07 62.0 139 33.1
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.4e-07 61.6 122 33.6
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 3.1e-07 61.2 102 32.4
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 4.1e-07 60.8 114 33.3
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 5.4e-07 60.5 247 27.5
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 7.0e-07 60.1 110 32.7
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 7.0e-07 60.1 135 31.9
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.6e-06 58.9 111 32.4
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 1.6e-06 58.9 128 31.2
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.0e-06 58.5 110 35.5
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.0e-06 58.5 218 27.1
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.7e-06 58.2 119 34.5
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.7e-06 58.2 119 34.5
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.7e-06 58.2 108 35.2
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 2.7e-06 58.2 132 31.1
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 2.7e-06 58.2 127 33.9
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 2.7e-06 58.2 108 35.2
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 2.7e-06 58.2 300 27.3
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.5e-06 57.8 217 28.1
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 3.5e-06 57.8 433 25.2
PGSC0003DMG400046434 Solanum tuberosum HOM05D019980 ORTHO05D022204 4.5e-06 57.4 121 31.4
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 5.9e-06 57.0 311 26.4
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 5.9e-06 57.0 128 30.5
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 7.7e-06 56.6 116 32.8
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 7.7e-06 56.6 114 34.2
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 7.7e-06 56.6 188 28.2


User provided reference genes

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