Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 5.0e-146 521.2 277 100.0
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 5.7e-142 507.7 275 98.2
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.5e-139 498.4 277 95.7
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.8e-111 406.4 271 82.7
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 9.9e-102 374.0 257 80.2
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.1e-100 370.5 257 79.8
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 3.6e-96 355.5 249 78.7
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.7e-96 355.1 257 77.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.3e-64 250.8 252 58.3
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 2.1e-64 250.0 253 60.5
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 7.2e-60 235.0 245 53.9
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 5.1e-58 228.8 235 54.0
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 2.5e-57 226.5 250 55.6
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.3e-56 224.2 204 62.3
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.7e-56 222.6 245 57.1
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 3.7e-56 222.6 253 57.3
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 4.8e-56 222.2 260 54.2
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 4.8e-56 222.2 251 54.2
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 4.8e-56 222.2 245 57.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 6.9e-55 218.4 175 66.3
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 9.0e-55 218.0 247 54.7
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.0e-54 216.9 244 51.2
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.6e-54 216.5 250 52.4
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.6e-54 216.5 250 51.2
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.4e-54 216.1 247 51.4
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 5.9e-54 215.3 245 56.7
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 7.7e-54 214.9 243 53.5
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 7.7e-54 214.9 247 51.0
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.0e-53 212.2 249 51.8
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 5.0e-53 212.2 249 51.4
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 6.5e-53 211.8 247 53.8
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 8.5e-53 211.5 241 55.2
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.1e-52 211.1 243 53.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.9e-52 210.3 248 53.2
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 2.5e-52 209.9 241 53.1
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 7.2e-52 208.4 240 52.5
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.2e-51 207.6 246 52.8
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 2.1e-51 206.8 256 50.4
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.1e-51 206.8 245 50.6
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.7e-51 206.5 263 49.4
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 2.7e-51 206.5 239 54.8
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 4.6e-51 205.7 237 52.7
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 4.6e-51 205.7 237 52.7
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 4.6e-51 205.7 220 55.5
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 6.1e-51 205.3 241 51.5
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 6.1e-51 205.3 269 49.1
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 8.8e-50 201.4 247 49.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.0e-49 200.3 246 52.8
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 5.7e-49 198.7 246 50.8
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.7e-49 198.7 240 51.7
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 7.4e-49 198.4 243 50.2
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 7.4e-49 198.4 269 49.8
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 9.7e-49 198.0 240 52.5
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.3e-48 197.6 252 50.8
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.3e-48 197.6 242 51.2
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.8e-48 196.4 242 49.2
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.8e-48 195.7 246 49.6
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 4.8e-48 195.7 257 50.6
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 8.2e-48 194.9 237 48.5
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-47 194.5 249 50.6
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.1e-47 194.5 246 50.4
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.1e-47 194.5 246 51.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.4e-47 194.1 234 49.6
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.8e-47 193.7 249 50.2
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.4e-47 193.4 251 51.0
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 3.1e-47 193.0 244 46.3
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 4.1e-47 192.6 239 48.5
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 9.1e-47 191.4 167 64.7
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.2e-46 191.0 235 50.6
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.0e-46 190.3 247 50.2
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.0e-46 190.3 216 52.3
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 4.5e-46 189.1 236 50.0
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 2.9e-45 186.4 242 52.1
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.8e-45 186.0 260 46.2
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 3.8e-45 186.0 243 46.9
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 5.0e-45 185.7 161 56.5
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 5.0e-45 185.7 188 60.6
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 6.5e-45 185.3 252 45.2
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.4e-44 184.1 231 51.5
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.9e-44 183.7 288 44.8
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 3.2e-44 183.0 258 44.2
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.2e-44 183.0 163 58.3
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 3.2e-44 183.0 243 50.2
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 4.2e-44 182.6 258 48.1
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 9.4e-44 181.4 240 47.9
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.2e-43 181.0 251 47.0
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.6e-43 180.6 261 47.1
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 4.7e-43 179.1 251 47.0
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 4.7e-43 179.1 240 52.5
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 6.1e-43 178.7 248 48.0
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.9e-43 178.3 250 48.8
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 7.9e-43 178.3 160 58.1
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.4e-42 177.6 249 45.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.4e-42 177.6 261 48.3
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 5.2e-42 175.6 246 45.9
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 8.8e-42 174.9 261 44.8
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.5e-41 174.1 263 44.9
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-41 174.1 261 47.9
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.6e-41 173.3 261 43.7
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.3e-41 172.9 151 60.3
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 3.3e-41 172.9 252 45.6
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.3e-41 172.9 236 51.3
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 4.4e-41 172.6 245 48.6
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 5.7e-41 172.2 252 45.6
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 5.7e-41 172.2 252 45.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 5.7e-41 172.2 250 48.4
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 7.4e-41 171.8 262 45.0
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 7.4e-41 171.8 301 41.2
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 7.4e-41 171.8 180 52.2
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.2e-40 170.2 260 47.7
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 2.2e-40 170.2 239 48.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.8e-40 169.9 367 38.7
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 8.2e-40 168.3 245 44.9
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.4e-39 167.5 252 45.2
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.4e-39 167.5 252 45.6
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.4e-39 166.8 164 50.6
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 9.1e-39 164.9 254 44.9
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-38 164.5 264 47.7
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.7e-37 160.6 259 44.8
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.9e-36 157.1 236 42.4
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 3.2e-36 156.4 167 52.7
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.2e-36 156.0 366 36.3
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.5e-36 155.6 248 41.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 4.7e-35 152.5 244 44.7
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 6.7e-34 148.7 146 58.2
PGSC0003DMG400032808 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.8e-29 132.9 89 77.5
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.2e-28 129.8 67 95.5
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 2.1e-27 127.1 282 34.8
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 6.1e-27 125.6 127 55.9
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.3e-26 123.6 242 41.3
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 6.8e-26 122.1 221 38.9
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 6.3e-24 115.5 235 36.2
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.6e-22 110.9 142 48.6
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 8.5e-21 105.1 144 46.5
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.1e-20 104.8 242 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 3.0e-18 96.7 214 34.1
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 4.0e-18 96.3 133 45.9
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 7.5e-17 92.0 214 31.3
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 9.8e-17 91.7 118 55.9
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 4.1e-15 86.3 212 33.0
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 5.4e-15 85.9 150 38.0
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 3.8e-13 79.7 167 41.9
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.5e-12 77.8 122 47.5
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 8.9e-10 68.6 110 47.3
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.9e-08 63.5 49 59.2
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.9e-08 63.5 49 59.2
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.8e-07 60.8 54 55.6
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.0e-07 58.9 148 33.8
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 7.8e-06 55.5 65 52.3


User provided reference genes

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