Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 0.0e+00 2002.6 1061 100.0
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 0.0e+00 1927.9 1061 96.8
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 0.0e+00 1857.8 1064 93.3
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 0.0e+00 1434.5 1095 74.6
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 0.0e+00 1301.2 1096 70.2
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 0.0e+00 1288.9 1110 67.9
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 2.3e-183 647.1 1117 41.4
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 4.8e-173 612.8 1104 41.0
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.6e-166 590.5 1124 39.9
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 2.7e-147 527.3 1088 37.4
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 2.7e-147 527.3 1132 37.9
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 1.1e-143 515.4 1124 37.5
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 8.3e-141 505.8 1132 36.7
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.0e-139 501.1 1125 36.3
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.7e-139 500.7 1121 36.3
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 4.6e-139 500.0 1122 35.4
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 8.6e-138 495.7 1123 35.2
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 1.9e-137 494.6 1126 35.3
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 2.3e-135 487.6 1129 34.5
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 3.1e-135 487.3 1115 36.9
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 4.0e-135 486.9 1105 34.9
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.3e-133 481.9 1124 35.2
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.9e-133 480.7 1128 35.5
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.4e-133 479.6 1122 35.2
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 5.4e-132 476.5 1116 35.7
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 4.6e-131 473.4 1107 35.4
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.7e-130 471.5 1123 35.4
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 9.5e-129 465.7 1093 37.1
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 2.1e-128 464.5 1085 35.8
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 2.8e-128 464.2 1094 35.9
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 5.2e-127 459.9 1118 34.3
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 1.2e-126 458.8 1122 36.5
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 5.4e-124 449.9 1110 34.9
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 3.5e-123 447.2 1118 35.4
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.1e-120 438.0 959 38.0
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 2.1e-120 438.0 1073 35.2
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 4.2e-116 423.7 1091 33.8
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 9.3e-116 422.5 1092 34.4
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 1.2e-115 422.2 1079 34.3
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 6.6e-114 416.4 1053 35.4
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.0e-110 404.8 1105 31.9
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 4.5e-110 403.7 1110 31.4
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.3e-109 402.1 1113 32.8
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 6.4e-109 399.8 1092 32.4
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 7.1e-108 396.4 900 37.2
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 5.1e-106 390.2 1160 32.2
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 1.5e-105 388.7 1083 33.0
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 1.3e-104 385.6 1146 32.6
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 2.8e-104 384.4 1118 31.6
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.1e-104 382.9 1096 32.7
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 2.4e-103 381.3 1100 32.7
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 6.9e-103 379.8 1086 32.0
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.5e-102 378.6 1095 33.1
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 3.4e-102 377.5 1079 30.7
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 4.2e-100 370.5 1100 32.3
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 9.3e-100 369.4 1095 33.5
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 1.8e-98 365.2 1153 32.5
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 3.9e-98 364.0 1072 33.1
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 2.5e-97 361.3 1148 31.9
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 2.1e-96 358.2 1110 32.5
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 6.5e-93 346.7 1094 30.5
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.9e-92 345.1 1089 32.0
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 1.6e-91 342.0 1100 31.2
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.2e-88 331.6 1116 31.3
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 6.3e-88 330.1 1084 31.4
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 5.3e-87 327.0 1098 30.4
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 6.9e-87 326.6 1084 29.8
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.2e-86 325.9 1105 30.3
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.2e-86 325.9 1108 31.0
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 7.2e-84 316.6 1072 30.7
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 1.6e-83 315.5 1121 30.7
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 2.1e-83 315.1 1143 30.2
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 2.1e-83 315.1 1112 29.3
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 6.1e-83 313.5 439 46.5
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 8.2e-80 303.1 1082 30.1
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 4.1e-79 300.8 1072 29.7
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 2.5e-76 291.6 1092 31.1
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 9.4e-76 289.7 463 44.9
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.4e-74 285.8 1051 30.4
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.1e-71 276.2 851 31.3
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 9.1e-71 273.1 1069 28.7
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 2.6e-70 271.6 1067 28.8
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 2.2e-69 268.5 1068 28.4
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 2.9e-69 268.1 1077 27.8
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 1.1e-68 266.2 1067 28.6
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 2.7e-67 261.5 1061 28.7
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 1.8e-66 258.8 1070 28.2
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 3.3e-65 254.6 846 31.6
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 4.4e-65 254.2 1093 28.6
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 2.8e-64 251.5 1077 30.0
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.8e-63 248.8 960 29.8
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 3.1e-63 248.1 1072 27.5
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.6e-62 245.7 1065 27.5
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 2.6e-62 245.0 1070 27.5
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 2.5e-60 238.4 1070 26.0
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 4.2e-60 237.7 1078 26.5
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 4.2e-60 237.7 1065 26.8
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 3.1e-55 221.5 1236 26.4
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 1.5e-49 202.6 1066 26.2
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 7.5e-49 200.3 1064 25.3
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 1.8e-47 195.7 247 46.6
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 7.7e-46 190.3 851 29.3
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 9.5e-44 183.3 226 43.4
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.7e-40 172.6 215 45.1
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 1.8e-39 169.1 1002 26.4
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 6.6e-37 160.6 1056 25.0
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 3.3e-36 158.3 409 32.0
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 3.4e-33 148.3 662 31.4
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 2.3e-26 125.6 124 50.0
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 1.3e-24 119.8 1101 23.2
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 8.6e-21 107.1 1098 22.4
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 2.8e-19 102.1 387 28.4
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.3e-18 99.0 168 35.7
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 2.9e-16 92.0 956 22.5
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.9e-15 89.4 222 34.7
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 3.2e-15 88.6 179 33.5
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 5.4e-15 87.8 169 34.3
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 9.2e-15 87.0 927 21.5
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.2e-14 86.7 968 23.0
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 4.6e-14 84.7 932 21.9
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.3e-13 82.4 925 21.5
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 3.0e-13 82.0 260 30.8
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.5e-12 79.7 959 22.4
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 7.3e-12 77.4 918 22.2
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 7.3e-12 77.4 167 29.9
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 9.5e-12 77.0 966 22.5
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.6e-11 76.3 177 28.2
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.6e-11 76.3 212 30.2
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.8e-11 75.5 260 29.2
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 2.8e-11 75.5 910 23.0
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 3.6e-11 75.1 181 28.2
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.6e-11 75.1 71 53.5
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 4.7e-11 74.7 206 29.6
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 6.2e-11 74.3 104 42.3
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 8.1e-11 73.9 1000 22.7
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 8.1e-11 73.9 970 22.8
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 8.1e-11 73.9 963 21.3
SEGI_09114 Sequoiadendron giganteum HOM05D006788 ORTHO05D008265 8.1e-11 73.9 1004 22.9
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 1.8e-10 72.8 224 30.8
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 1.8e-10 72.8 967 22.4
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.8e-10 72.8 206 29.1
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 2.4e-10 72.4 991 21.7
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 4.0e-10 71.6 228 31.1
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 4.0e-10 71.6 920 22.3
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 5.2e-10 71.2 169 25.4
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.5e-09 69.7 169 31.4
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 2.0e-09 69.3 208 32.7
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 2.6e-09 68.9 173 28.9
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 2.6e-09 68.9 71 45.1
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.6e-09 68.9 171 29.2
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 3.4e-09 68.6 933 21.5
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 4.4e-09 68.2 181 26.5
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 4.4e-09 68.2 914 24.0
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 5.8e-09 67.8 922 20.7
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 9.9e-09 67.0 934 21.1
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 9.9e-09 67.0 961 21.6
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 1.7e-08 66.2 169 31.4
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.2e-08 65.9 411 21.9
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.2e-08 65.9 411 21.9
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.2e-08 65.9 168 26.8
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 2.9e-08 65.5 288 24.3
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 3.8e-08 65.1 939 21.5
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 4.9e-08 64.7 912 20.6
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 8.4e-08 63.9 953 21.5
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 1.4e-07 63.2 933 22.1
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 1.9e-07 62.8 979 19.9
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 2.4e-07 62.4 925 21.5
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.4e-07 62.4 169 29.6
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 2.4e-07 62.4 350 26.3
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 9.2e-07 60.5 209 28.2
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 9.2e-07 60.5 167 31.1
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-06 60.1 944 21.3
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.1e-06 59.3 1061 21.2
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 2.7e-06 58.9 168 26.8
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.7e-06 58.9 916 21.3
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 3.5e-06 58.5 167 24.0
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 6.0e-06 57.8 461 20.2
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 6.0e-06 57.8 182 25.3
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 7.8e-06 57.4 163 28.2
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 7.8e-06 57.4 970 21.2


User provided reference genes

Program Settings